Non-Coding RNA Search

Ss1.1-bliv-UMC-pblivv1-003-h11.3

Sequence:


               
               GTTTTTCTCAAGCAGAGGATTTTCACCATCCCTACATATTTCACTATGTTTCGAATACAG
TGAGAATTCTGATTTTCTTCAAGGATTAATCTCCTATTTTCATGTGTGTTTTTAAGAAGG
AGAGGGTATTTACTGCTGTAGTGATTAGAGAATATAAATGAAATCCTTCACAAACCCCAA
GGAAAGGCTAACATTTGTTTAGCGGAGCCCTCATACTCTAATACCTTTTAAAGTAAAATA
TTTTACAGTTAGATGCCAGACATCTTAAGTATCTAAGTAATTTATTTAATCGTTATACTC
TAATTAGCAGGAACAAATGCTACACATGTTGTTTGTGTTAAATAGATTAGAGAGAAATTG
CATCACAATGTAAGTCTGACACCTTAAAGAGAAGCAATTAGTTTTATGGTTGTTTTGTTT
TTAATGCATTTAAAATAAAGTGGCCGAGGTTAATTTAATGAGTGTATGTGCCTTAAACTT
GTTACAGCCTCCCACAGCTTAAACTTTTCTTCAAAGGGTGTCCTTAACTTCAGTGCCTGA
CTCCCTATGGTTTTCTTTTTTCTTATGTGCATCATATTAAAAAAGAAAAAGTACTGGCCG
GAAAATATTCCCAGGATCTTCCTTGTTTCCATATATTAGCCAATGTAAGACCAATGAAAT
TATTATCTTTTTGGAAAGGCCCATTGAGCAGAATACTAGCTGAGCTCAGAAAAGTAACAT
TTTCTTAAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTCTCAAGCAGAGGATTTTCACCATCCCTACATATTTCACTATGTTTCGAATACAG
TGAGAATTCTGATTTTCTTCAAGGATTAATCTCCTATTTTCATGTGTGTTTTTAAGAAGG
AGAGGGTATTTACTGCTGTAGTGATTAGAGAATATAAATGAAATCCTTCACAAACCCCAA
GGAAAGGCTAACATTTGTTTAGCGGAGCCCTCATACTCTAATACCTTTTAAAGTAAAATA
TTTTACAGTTAGATGCCAGACATCTTAAGTATCTAAGTAATTTATTTAATCGTTATACTC
TAATTAGCAGGAACAAATGCTACACATGTTGTTTGTGTTAAATAGATTAGAGAGAAATTG
CATCACAATGTAAGTCTGACACCTTAAAGAGAAGCAATTAGTTTTATGGTTGTTTTGTTT
TTAATGCATTTAAAATAAAGTGGCCGAGGTTAATTTAATGAGTGTATGTGCCTTAAACTT
GTTACAGCCTCCCACAGCTTAAACTTTTCTTCAAAGGGTGTCCTTAACTTCAGTGCCTGA
CTCCCTATGGTTTTCTTTTTTCTTATGTGCATCATATTAAAAAAGAAAAAGTACTGGCCG
GAAAATATTCCCAGGATCTTCCTTGTTTCCATATATTAGCCAATGTAAGACCAATGAAAT
TATTATCTTTTTGGAAAGGCCCATTGAGCAGAATACTAGCTGAGCTCAGAAAAGTAACAT
TTTCTTAAGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               245-404, - strand, RNAz p=0.667417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-404, - strand, RNAz p=0.667417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-732, gnl|bosTau2|chr3 (80019751-80020475)
               

               
               2-732, gnl|Hg17|chr18 (18011876-18012905)
               

               
               2-732, gnl|Mm7|chr18 (11266486-11267249)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-732, gnl|bosTau2|chr3 (80019751-80020475)
               

               
               2-732, gnl|Hg17|chr18 (18011876-18012905)
               

               
               2-732, gnl|Mm7|chr18 (11266486-11267249)

	2-732, gnl\|bosTau2\|chr3 (80019751-80020475)
	2-732, gnl\|Hg17\|chr18 (18011876-18012905)
	2-732, gnl\|Mm7\|chr18 (11266486-11267249)