Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo4-014-d07.3

Sequence:


               
               CTGAACTATGTTTCTTGTATCAACTTATGTCAGACTCTTTTCTTTTCCAAGCTAGTAAGC
TGGCTTTTCCATTTCTGGTGTCTGATATTCTGACAATCATCAGCGGAAAAGGTCACGGCA
CTTTCCAGAAGCTTTACAGGGTTTCAGAAAGTGCCAGTAACTCTCAGCTTTTACTTCCTC
TGTAGCAAGATGACAGTTACAATGCAGCTTTCTTGAGCTGGTAGAGTGTTCGCCCCCTGG
CGATGGACAATTTGAGGGGCTTCTGGGACCCCTGAGAGTGCAGAGGAGGACAGCCTCTTC
CTGCTGGCCTTGCTCCTGGGGACTTTGACCCCCACATGTCCTTCTGTCAGGGTCAGTCAG
TTACCTGGGAGCATTTGAGCCTGGCCCCACTCCTTAGTGGCTTTGCACTGGGGCTGCATC
TCCCTTTACAGATCTCAGATTTTCCTCTGCAAAATGAGGCTGGTGAAGGGAAAAAAGGTG
AATTCTTAGAATTAAAAAAAAAAAATCTTGTGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACTATGTTTCTTGTATCAACTTATGTCAGACTCTTTTCTTTTCCAAGCTAGTAAGC
TGGCTTTTCCATTTCTGGTGTCTGATATTCTGACAATCATCAGCGGAAAAGGTCACGGCA
CTTTCCAGAAGCTTTACAGGGTTTCAGAAAGTGCCAGTAACTCTCAGCTTTTACTTCCTC
TGTAGCAAGATGACAGTTACAATGCAGCTTTCTTGAGCTGGTAGAGTGTTCGCCCCCTGG
CGATGGACAATTTGAGGGGCTTCTGGGACCCCTGAGAGTGCAGAGGAGGACAGCCTCTTC
CTGCTGGCCTTGCTCCTGGGGACTTTGACCCCCACATGTCCTTCTGTCAGGGTCAGTCAG
TTACCTGGGAGCATTTGAGCCTGGCCCCACTCCTTAGTGGCTTTGCACTGGGGCTGCATC
TCCCTTTACAGATCTCAGATTTTCCTCTGCAAAATGAGGCTGGTGAAGGGAAAAAAGGTG
AATTCTTAGAATTAAAAAAAAAAAATCTTGTGATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               70-203, - strand, RNAz p=0.992696

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-203, - strand, RNAz p=0.992696

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-512, gnl|bosTau2|chr4 (65260195-65259670)
               

               
               1-512, gnl|Hg17|chr7 (148315398-148315936)
               

               
               1-512, gnl|Mm7|chr6 (47827392-47828148)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-512, gnl|bosTau2|chr4 (65260195-65259670)
               

               
               1-512, gnl|Hg17|chr7 (148315398-148315936)
               

               
               1-512, gnl|Mm7|chr6 (47827392-47828148)

	1-512, gnl\|bosTau2\|chr4 (65260195-65259670)
	1-512, gnl\|Hg17\|chr7 (148315398-148315936)
	1-512, gnl\|Mm7\|chr6 (47827392-47828148)