Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nql-b-09-0-UI.s1.3

Sequence:


               
               CTGCCGGAGAGTCTCTGCTTCCCCCTTCCTACCCGCTCCACGGCGGTAACTCAGGCTCTT
CGGAGAGGGGGAGACAGAGAAAGAGAGAGACTGACTCAATAAAGTTTCCAGAAACAACTG
CTACTAAAAAGGGCCCGAGGTGGGGGGAAACCCCCGTCCTTCCCCGCCCCTCTCCAAAAG
CCTGAGGGACCGTTGCAGGTGGAGCGGCGCTGGGGGGAGCCGGGCTCCGGCAGCAGCCGT
TGCCCCGGCGAGGGGCGCCTCGGGTCCTGCCCTCTCCGGTTCCGGCTCCTTCGGTGGCGG
CGGCGGCGGCTGCGGGGCGGTTCCTCCTGTCAACTGCCTGCGACCGCGCGCCGACCGCCC
GCCCAGCTCCCCAGCGCGGAGGGACGCCGTGCGCCGCCGCCGCCGCCGTCGCCTCGGGCC
GCGGAGGGACGTGGTGAGCTGGGCGCTTCCGCGTCAGCGCCGGCGGGGACTCTTTGGGAG
CGCGTCGGGCCCGAACCCGGGTCCCCTCGCCTGGTCCGTGGAGGCTGCGCCAGGTGGGGC
CCGAAGTCGCCTCCCACGCCAGGCTGTCCCCGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGGAGAGTCTCTGCTTCCCCCTTCCTACCCGCTCCACGGCGGTAACTCAGGCTCTT
CGGAGAGGGGGAGACAGAGAAAGAGAGAGACTGACTCAATAAAGTTTCCAGAAACAACTG
CTACTAAAAAGGGCCCGAGGTGGGGGGAAACCCCCGTCCTTCCCCGCCCCTCTCCAAAAG
CCTGAGGGACCGTTGCAGGTGGAGCGGCGCTGGGGGGAGCCGGGCTCCGGCAGCAGCCGT
TGCCCCGGCGAGGGGCGCCTCGGGTCCTGCCCTCTCCGGTTCCGGCTCCTTCGGTGGCGG
CGGCGGCGGCTGCGGGGCGGTTCCTCCTGTCAACTGCCTGCGACCGCGCGCCGACCGCCC
GCCCAGCTCCCCAGCGCGGAGGGACGCCGTGCGCCGCCGCCGCCGCCGTCGCCTCGGGCC
GCGGAGGGACGTGGTGAGCTGGGCGCTTCCGCGTCAGCGCCGGCGGGGACTCTTTGGGAG
CGCGTCGGGCCCGAACCCGGGTCCCCTCGCCTGGTCCGTGGAGGCTGCGCCAGGTGGGGC
CCGAAGTCGCCTCCCACGCCAGGCTGTCCCCGCGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-228, + strand, RNAz p=0.953098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-228, + strand, RNAz p=0.953098

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               223-343, + strand, RNAmicro p=0.913935

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               223-343, + strand, RNAmicro p=0.913935

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_176814, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_176814, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr4 (48391166-48390596)
               

               
               1-576, gnl|Hg17|chr7 (126626694-126626120)
               

               
               1-576, gnl|Mm7|chr6 (28194055-28193481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr4 (48391166-48390596)
               

               
               1-576, gnl|Hg17|chr7 (126626694-126626120)
               

               
               1-576, gnl|Mm7|chr6 (28194055-28193481)

	1-576, gnl\|bosTau2\|chr4 (48391166-48390596)
	1-576, gnl\|Hg17\|chr7 (126626694-126626120)
	1-576, gnl\|Mm7\|chr6 (28194055-28193481)