Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqs-b-09-0-UI.s1.3

Sequence:


               
               GTCCCCGACCAGCCAGGTCCAAGTCACTCCTTTGTGATCTGACTGCCCAGAATCCCTGCA
GGCCTGGCTGCCATCCTGCCTGCATAACACCTGCCCTCCCAGGGACACTGGCCCTTTGTT
GAAGGAGATGGACTATGGGGACAGCCCTGGGGAGGGGCTCAGCTAAGCAGGCCAGGCTGG
CGCCAGGCAGGACTGGGGGGCCTCGGCAAACAACGCCTCCTACAGAGTGGCCTGCTGGGC
GAGGGCAGGACGGGGCAGTGAGCAGCAGCCCAACCACAATGCCAGATGGGACTGGAACAG
GGATCAAGGACTAGAAGGTGAGCAGGCCTGCAGGCCCCAGCCACAGGACCCTCATCAGAC
ACACACTCACAGACATGGAGGTTCCTCCTCTTCCCTCTCCTCATCTCTCTGCCCAAGCTC
AGCCCCTCATGGTGTCTCTGCCAGGTCTGGCTCGGGGAACCACAGCCACTCCTGCCAGGG
GTGACTGGATCCATGGCTCTGATCCCTCAGTGAACTGAGAGAGCTTGAGACTGGTCCTTC
TGTTCCCTCTTCTCCCAGAGCTTAGGGGTGACAGAGACCCCCTGACCTGAAGTCAGCCCC
TCACGGGCTGTTGGTTGTGCCAATTGAGAAGTAGATCTGGGCTGAAAATAGGATCATTTC
CACCCTCTCTCTGCTAAGCATGGTGCTGAGTGCTTGACCTGCAGCCTCTCATTGGATCCC
CCCCACAACAACCTCCTCGAATTATGCCGGGGTTACATCCCAATAAATGCATCTTAAGTT
GAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCGACCAGCCAGGTCCAAGTCACTCCTTTGTGATCTGACTGCCCAGAATCCCTGCA
GGCCTGGCTGCCATCCTGCCTGCATAACACCTGCCCTCCCAGGGACACTGGCCCTTTGTT
GAAGGAGATGGACTATGGGGACAGCCCTGGGGAGGGGCTCAGCTAAGCAGGCCAGGCTGG
CGCCAGGCAGGACTGGGGGGCCTCGGCAAACAACGCCTCCTACAGAGTGGCCTGCTGGGC
GAGGGCAGGACGGGGCAGTGAGCAGCAGCCCAACCACAATGCCAGATGGGACTGGAACAG
GGATCAAGGACTAGAAGGTGAGCAGGCCTGCAGGCCCCAGCCACAGGACCCTCATCAGAC
ACACACTCACAGACATGGAGGTTCCTCCTCTTCCCTCTCCTCATCTCTCTGCCCAAGCTC
AGCCCCTCATGGTGTCTCTGCCAGGTCTGGCTCGGGGAACCACAGCCACTCCTGCCAGGG
GTGACTGGATCCATGGCTCTGATCCCTCAGTGAACTGAGAGAGCTTGAGACTGGTCCTTC
TGTTCCCTCTTCTCCCAGAGCTTAGGGGTGACAGAGACCCCCTGACCTGAAGTCAGCCCC
TCACGGGCTGTTGGTTGTGCCAATTGAGAAGTAGATCTGGGCTGAAAATAGGATCATTTC
CACCCTCTCTCTGCTAAGCATGGTGCTGAGTGCTTGACCTGCAGCCTCTCATTGGATCCC
CCCCACAACAACCTCCTCGAATTATGCCGGGGTTACATCCCAATAAATGCATCTTAAGTT
GAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-100, - strand, RNAz p=0.965283
               

               
               304-404, - strand, RNAz p=0.998827

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-100, - strand, RNAz p=0.965283
               

               
               304-404, - strand, RNAz p=0.998827

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               59-196, - strand, RNAmicro p=0.999745
               

               
               65-191, + strand, RNAmicro p=0.999373

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               59-196, - strand, RNAmicro p=0.999745
               

               
               65-191, + strand, RNAmicro p=0.999373

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-457, gnl|bosTau2|chr28 (27891534-27891978)
               

               
               3-457, gnl|canFam2|chr4 (32268348-32269157)
               

               
               3-457, gnl|hg17|chr10 (80765118-80765916)
               

               
               3-457, gnl|Hg17|chr10 (80765488-80765936)
               

               
               3-457, gnl|mm7|chr14 (23350529-23351269)
               

               
               3-457, gnl|oryCun1|scaffold_213544 (6002-6830)
               

               
               3-457, gnl|panTro1|chr8 (82157054-82157852)
               

               
               3-457, gnl|rheMac2|chr9 (57737204-57736406)
               

               
               3-457, gnl|rn3|chr16 (1278231-1279039)
               


               
               476-785, gnl|bosTau2|chr28 (27891974-27892289)
               

               
               476-785, gnl|Hg17|chr10 (80765932-80766192)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-457, gnl|bosTau2|chr28 (27891534-27891978)
               

               
               3-457, gnl|canFam2|chr4 (32268348-32269157)
               

               
               3-457, gnl|hg17|chr10 (80765118-80765916)
               

               
               3-457, gnl|Hg17|chr10 (80765488-80765936)
               

               
               3-457, gnl|mm7|chr14 (23350529-23351269)
               

               
               3-457, gnl|oryCun1|scaffold_213544 (6002-6830)
               

               
               3-457, gnl|panTro1|chr8 (82157054-82157852)
               

               
               3-457, gnl|rheMac2|chr9 (57737204-57736406)
               

               
               3-457, gnl|rn3|chr16 (1278231-1279039)
               


               
               476-785, gnl|bosTau2|chr28 (27891974-27892289)
               

               
               476-785, gnl|Hg17|chr10 (80765932-80766192)

	3-100, - strand, RNAz p=0.965283
	304-404, - strand, RNAz p=0.998827

	59-196, - strand, RNAmicro p=0.999745
	65-191, + strand, RNAmicro p=0.999373

	3-457, gnl\|bosTau2\|chr28 (27891534-27891978)
	3-457, gnl\|canFam2\|chr4 (32268348-32269157)
	3-457, gnl\|hg17\|chr10 (80765118-80765916)
	3-457, gnl\|Hg17\|chr10 (80765488-80765936)
	3-457, gnl\|mm7\|chr14 (23350529-23351269)
	3-457, gnl\|oryCun1\|scaffold_213544 (6002-6830)
	3-457, gnl\|panTro1\|chr8 (82157054-82157852)
	3-457, gnl\|rheMac2\|chr9 (57737204-57736406)
	3-457, gnl\|rn3\|chr16 (1278231-1279039)

	476-785, gnl\|bosTau2\|chr28 (27891974-27892289)
	476-785, gnl\|Hg17\|chr10 (80765932-80766192)