Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrb-d-09-0-UI.s1.3

Sequence:


               
               GCTCCCCACACCAGGCAGAACATCTGCCCCTGCCCAAGGGCCCACATTTCCAAGAGAGGA
CTCTTCGTTCTGCAGTTAGCAAAGGCCGAGAAAACCTTTCTCACTGTTTGGCCAAGGCTT
GCTCTTCTCGTGGCTCCAGTGTCATGGAGAAGGATTTACTCCGATCCAGTTACACGTTGT
AGACGCTTCTTGAGTCCAACAGAATCAAAAAGCACCGACTCCCCCAAAGCACTTAACTGC
CCAGATTTCATTTTAATTTTCTCTCACAAGCCTGAGCATTCCAGCTCTAATTCTGAAAGA
GCCAGAATGCGATTCCTCCAGTTTACTTGGCTACAGGAAGTCCCGTCTTGTACCAGCGCT
CCCTCCACAAGTATTTCTGGAAATCCTCGAGGAATGCTTACGTGCTCTCCAAATCCCTGC
TGGTGTTTGCTCTGCCAGCCGTCTGGCTCCAGACCACTGTAGTTTGAAGGACCACTTCTC
CATGCCAGGAAAATAGCAGTTCTGACTCTCGGCAACTTTGCTCCCAGCACAGACATGGGC
TCTTCCCTGAGTGTCTCAAAGCACAATTAATCCCAAGCTAAACCAGCGAATAAAAGTTTA
CTGAAGGCTTGGAGATAGCAGGGGAGACTGGTAAAAAAAAAAATAAAAATAAAAAATAAA
TAAATATATATATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCCACACCAGGCAGAACATCTGCCCCTGCCCAAGGGCCCACATTTCCAAGAGAGGA
CTCTTCGTTCTGCAGTTAGCAAAGGCCGAGAAAACCTTTCTCACTGTTTGGCCAAGGCTT
GCTCTTCTCGTGGCTCCAGTGTCATGGAGAAGGATTTACTCCGATCCAGTTACACGTTGT
AGACGCTTCTTGAGTCCAACAGAATCAAAAAGCACCGACTCCCCCAAAGCACTTAACTGC
CCAGATTTCATTTTAATTTTCTCTCACAAGCCTGAGCATTCCAGCTCTAATTCTGAAAGA
GCCAGAATGCGATTCCTCCAGTTTACTTGGCTACAGGAAGTCCCGTCTTGTACCAGCGCT
CCCTCCACAAGTATTTCTGGAAATCCTCGAGGAATGCTTACGTGCTCTCCAAATCCCTGC
TGGTGTTTGCTCTGCCAGCCGTCTGGCTCCAGACCACTGTAGTTTGAAGGACCACTTCTC
CATGCCAGGAAAATAGCAGTTCTGACTCTCGGCAACTTTGCTCCCAGCACAGACATGGGC
TCTTCCCTGAGTGTCTCAAAGCACAATTAATCCCAAGCTAAACCAGCGAATAAAAGTTTA
CTGAAGGCTTGGAGATAGCAGGGGAGACTGGTAAAAAAAAAAATAAAAATAAAAAATAAA
TAAATATATATATAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-637, - strand, RNAz p=0.997811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-637, - strand, RNAz p=0.997811

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               472-575, - strand, RNAmicro p=0.999614
               

               
               300-417, - strand, RNAmicro p=0.984058

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               472-575, - strand, RNAmicro p=0.999614
               

               
               300-417, - strand, RNAmicro p=0.984058

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               35-637, gnl|bosTau2|chr21 (19203799-19204409)
               

               
               35-637, gnl|Hg17|chr15 (78970204-78970761)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-637, gnl|bosTau2|chr21 (19203799-19204409)
               

               
               35-637, gnl|Hg17|chr15 (78970204-78970761)

	472-575, - strand, RNAmicro p=0.999614
	300-417, - strand, RNAmicro p=0.984058

	35-637, gnl\|bosTau2\|chr21 (19203799-19204409)
	35-637, gnl\|Hg17\|chr15 (78970204-78970761)