Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrl-d-12-0-UI.s1.3

Sequence:


               
               TATATATAGGTATGTGTATATGTGTATATATACACACACATATATACATATGGCTGTACT
ATCATATAGATCAAACAGCCAAACACCTGGAAGTATTAGATACAAGTTTAAAATATCTTT
TATAGGTTTTATATAAAAATGTATGAGTTTGTGTGAAAGTTCTGATACCAGTTGTAATGG
ATTCAAATTTATGTGAGCAATAAAGAAGCAATTGGCAGATGTTGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATATAGGTATGTGTATATGTGTATATATACACACACATATATACATATGGCTGTACT
ATCATATAGATCAAACAGCCAAACACCTGGAAGTATTAGATACAAGTTTAAAATATCTTT
TATAGGTTTTATATAAAAATGTATGAGTTTGTGTGAAAGTTCTGATACCAGTTGTAATGG
ATTCAAATTTATGTGAGCAATAAAGAAGCAATTGGCAGATGTTGGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-152, - strand, RNAz p=0.999787
               

               
               19-148, - strand, RNAz p=0.940576

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-152, - strand, RNAz p=0.999787
               

               
               19-148, - strand, RNAz p=0.940576

Similar Transcript(s): 12 entry(ies)

More info

Similar Transcript(s): 12 entry(ies)

Help | Less info


               
               66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG260869.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb|BG532617.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM729199.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', 
(gb|CB129592.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence 
(gb|CD695671.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DV769280.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG260869.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb|BG532617.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM729199.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', 
(gb|CB129592.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence 
(gb|CD695671.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DV769280.1|), blast E-value=1e-35, identity=98.8%

Similar Transcript(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG260869.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb|BG532617.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM729199.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', 
(gb|CB129592.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence 
(gb|CD695671.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DV769280.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG260869.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb|BG532617.1|), 
blast E-value=1e-35, identity=98.8% 
               

               
               66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM729199.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', 
(gb|CB129592.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence 
(gb|CD695671.1|), blast E-value=1e-35, identity=98.8% 
               

               
               66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DV769280.1|), blast E-value=1e-35, identity=98.8%

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-228, gnl|bosTau2|chr5 (30386376-30386609)
               

               
               1-228, gnl|canFam2|chr10 (10820889-10821961)
               

               
               1-228, gnl|dasNov1|scaffold_1036 (10497-11541)
               

               
               1-228, gnl|echTel1|scaffold_261656 (4853-3712)
               

               
               1-228, gnl|galGal2|chr1 (30901622-30902549)
               

               
               1-228, gnl|hg17|chr12 (63926809-63927858)
               

               
               1-228, gnl|Hg17|chr12 (63927090-63927307)
               

               
               1-228, gnl|loxAfr1|scaffold_7793 (26222-27276)
               

               
               1-228, gnl|mm7|chr10 (120321200-120320168)
               

               
               1-228, gnl|Mm7|chr10 (120320915-120320681)
               

               
               1-228, gnl|monDom2|scaffold_354 (89305-88289)
               

               
               1-228, gnl|oryCun1|scaffold_207984 (6212-7245)
               

               
               1-228, gnl|panTro1|chr10 (65291303-65292351)
               

               
               1-228, gnl|rheMac2|chr11 (62295023-62296072)
               

               
               1-228, gnl|rn3|chr7 (60252800-60251761)
               

               
               1-228, gnl|xenTro1|scaffold_265 (643733-642855)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr5 (30386376-30386609)
               

               
               1-228, gnl|canFam2|chr10 (10820889-10821961)
               

               
               1-228, gnl|dasNov1|scaffold_1036 (10497-11541)
               

               
               1-228, gnl|echTel1|scaffold_261656 (4853-3712)
               

               
               1-228, gnl|galGal2|chr1 (30901622-30902549)
               

               
               1-228, gnl|hg17|chr12 (63926809-63927858)
               

               
               1-228, gnl|Hg17|chr12 (63927090-63927307)
               

               
               1-228, gnl|loxAfr1|scaffold_7793 (26222-27276)
               

               
               1-228, gnl|mm7|chr10 (120321200-120320168)
               

               
               1-228, gnl|Mm7|chr10 (120320915-120320681)
               

               
               1-228, gnl|monDom2|scaffold_354 (89305-88289)
               

               
               1-228, gnl|oryCun1|scaffold_207984 (6212-7245)
               

               
               1-228, gnl|panTro1|chr10 (65291303-65292351)
               

               
               1-228, gnl|rheMac2|chr11 (62295023-62296072)
               

               
               1-228, gnl|rn3|chr7 (60252800-60251761)
               

               
               1-228, gnl|xenTro1|scaffold_265 (643733-642855)

	1-152, - strand, RNAz p=0.999787
	19-148, - strand, RNAz p=0.940576

	66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb\|BG260869.1\|), blast E-value=1e-35, identity=98.8%
	66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb\|BG532617.1\|), blast E-value=1e-35, identity=98.8%
	66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone (gb\|BM729199.1\|), blast E-value=1e-35, identity=98.8%
	66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', (gb\|CB129592.1\|), blast E-value=1e-35, identity=98.8%
	66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence (gb\|CD695671.1\|), blast E-value=1e-35, identity=98.8%
	66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone (gb\|DV769280.1\|), blast E-value=1e-35, identity=98.8%
	66-148, 602372466F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb\|BG260869.1\|), blast E-value=1e-35, identity=98.8%
	66-148, 602562187F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE (gb\|BG532617.1\|), blast E-value=1e-35, identity=98.8%
	66-148, UI-E-EO1-aiw-n-09-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone (gb\|BM729199.1\|), blast E-value=1e-35, identity=98.8%
	66-148, K-EST0179258 L11SNU354 Homo sapiens cDNA clone L11SNU354-12-F04 5', (gb\|CB129592.1\|), blast E-value=1e-35, identity=98.8%
	66-148, EST12194 human nasopharynx Homo sapiens cDNA, mRNA sequence (gb\|CD695671.1\|), blast E-value=1e-35, identity=98.8%
	66-148, ILLUMIGEN_MCQ_68102 Katze_MMTE Macaca mulatta cDNA clone (gb\|DV769280.1\|), blast E-value=1e-35, identity=98.8%

	1-228, gnl\|bosTau2\|chr5 (30386376-30386609)
	1-228, gnl\|canFam2\|chr10 (10820889-10821961)
	1-228, gnl\|dasNov1\|scaffold_1036 (10497-11541)
	1-228, gnl\|echTel1\|scaffold_261656 (4853-3712)
	1-228, gnl\|galGal2\|chr1 (30901622-30902549)
	1-228, gnl\|hg17\|chr12 (63926809-63927858)
	1-228, gnl\|Hg17\|chr12 (63927090-63927307)
	1-228, gnl\|loxAfr1\|scaffold_7793 (26222-27276)
	1-228, gnl\|mm7\|chr10 (120321200-120320168)
	1-228, gnl\|Mm7\|chr10 (120320915-120320681)
	1-228, gnl\|monDom2\|scaffold_354 (89305-88289)
	1-228, gnl\|oryCun1\|scaffold_207984 (6212-7245)
	1-228, gnl\|panTro1\|chr10 (65291303-65292351)
	1-228, gnl\|rheMac2\|chr11 (62295023-62296072)
	1-228, gnl\|rn3\|chr7 (60252800-60251761)
	1-228, gnl\|xenTro1\|scaffold_265 (643733-642855)