Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nwc-b-01-0-UI.s1.3

Sequence:


               
               TGGCAAGGTCCACCTGGGAAGCGGGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACA
AGTAACCCAAGGAGATTCCAAGTACACAAAGAACTTGGCAGTCATGATTTGGGGAACAGA
TGTTCTGAAGAACAGAAGCGTCACAGGAGTTGCCACAAAAAAAAAGAAAGATGCAGTCCC
TAAGCCACCCCTCTCACCTCACAAACTCAGCATCGTCAGAGAGTGTTTGTACGACAGAAT
AGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTA
CATCTGTGAAAAAATCATGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGC
AAAATACAATTTGCAATAAACTTTGGATTTTTCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAAGGTCCACCTGGGAAGCGGGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACA
AGTAACCCAAGGAGATTCCAAGTACACAAAGAACTTGGCAGTCATGATTTGGGGAACAGA
TGTTCTGAAGAACAGAAGCGTCACAGGAGTTGCCACAAAAAAAAAGAAAGATGCAGTCCC
TAAGCCACCCCTCTCACCTCACAAACTCAGCATCGTCAGAGAGTGTTTGTACGACAGAAT
AGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTA
CATCTGTGAAAAAATCATGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGC
AAAATACAATTTGCAATAAACTTTGGATTTTTCTTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57096646|ref|XP_532587.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57096646|ref|XP_532587.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-164, + strand, RNAz p=0.993522

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-164, + strand, RNAz p=0.993522

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               6-221, gnl|bosTau2|chr3 (69618043-69618258)
               

               
               6-221, gnl|canFam2|chr15 (15242773-15242543)
               

               
               6-221, gnl|danRer3|chrUn (38238192-38238419)
               

               
               6-221, gnl|echTel1|scaffold_311425 (74622-74392)
               

               
               6-221, gnl|fr1|chrUn (47976852-47977082)
               

               
               6-221, gnl|galGal2|chr8 (23250108-23250339)
               

               
               6-221, gnl|hg17|chr1 (48913927-48914157)
               

               
               6-221, gnl|Hg17|chr1 (48914146-48913931)
               

               
               6-221, gnl|mm7|chr4 (110830743-110830514)
               

               
               6-221, gnl|Mm7|chr4 (110830522-110830737)
               

               
               6-221, gnl|monDom2|scaffold_70 (4235990-4235760)
               

               
               6-221, gnl|oryCun1|scaffold_173188 (471-701)
               

               
               6-221, gnl|panTro1|chr1 (47129719-47129949)
               

               
               6-221, gnl|rheMac2|chr1 (51614164-51614394)
               

               
               6-221, gnl|rn3|chr5 (132999586-132999356)
               

               
               6-221, gnl|tetNig1|chr1 (10727324-10727552)
               

               
               6-221, gnl|xenTro1|scaffold_14 (765648-765423)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-221, gnl|bosTau2|chr3 (69618043-69618258)
               

               
               6-221, gnl|canFam2|chr15 (15242773-15242543)
               

               
               6-221, gnl|danRer3|chrUn (38238192-38238419)
               

               
               6-221, gnl|echTel1|scaffold_311425 (74622-74392)
               

               
               6-221, gnl|fr1|chrUn (47976852-47977082)
               

               
               6-221, gnl|galGal2|chr8 (23250108-23250339)
               

               
               6-221, gnl|hg17|chr1 (48913927-48914157)
               

               
               6-221, gnl|Hg17|chr1 (48914146-48913931)
               

               
               6-221, gnl|mm7|chr4 (110830743-110830514)
               

               
               6-221, gnl|Mm7|chr4 (110830522-110830737)
               

               
               6-221, gnl|monDom2|scaffold_70 (4235990-4235760)
               

               
               6-221, gnl|oryCun1|scaffold_173188 (471-701)
               

               
               6-221, gnl|panTro1|chr1 (47129719-47129949)
               

               
               6-221, gnl|rheMac2|chr1 (51614164-51614394)
               

               
               6-221, gnl|rn3|chr5 (132999586-132999356)
               

               
               6-221, gnl|tetNig1|chr1 (10727324-10727552)
               

               
               6-221, gnl|xenTro1|scaffold_14 (765648-765423)

	6-221, gnl\|bosTau2\|chr3 (69618043-69618258)
	6-221, gnl\|canFam2\|chr15 (15242773-15242543)
	6-221, gnl\|danRer3\|chrUn (38238192-38238419)
	6-221, gnl\|echTel1\|scaffold_311425 (74622-74392)
	6-221, gnl\|fr1\|chrUn (47976852-47977082)
	6-221, gnl\|galGal2\|chr8 (23250108-23250339)
	6-221, gnl\|hg17\|chr1 (48913927-48914157)
	6-221, gnl\|Hg17\|chr1 (48914146-48913931)
	6-221, gnl\|mm7\|chr4 (110830743-110830514)
	6-221, gnl\|Mm7\|chr4 (110830522-110830737)
	6-221, gnl\|monDom2\|scaffold_70 (4235990-4235760)
	6-221, gnl\|oryCun1\|scaffold_173188 (471-701)
	6-221, gnl\|panTro1\|chr1 (47129719-47129949)
	6-221, gnl\|rheMac2\|chr1 (51614164-51614394)
	6-221, gnl\|rn3\|chr5 (132999586-132999356)
	6-221, gnl\|tetNig1\|chr1 (10727324-10727552)
	6-221, gnl\|xenTro1\|scaffold_14 (765648-765423)