Ss1.1-mCP1-MI-P-CP1-nwn-c-11-0-UI.s1.3
|
CACGCGGGACAGCGCTTCGGAGCAGAGACAGGACATGTCTCCGACAGTGTTCTGGGCACT
ACCCGGAGTTCAGGTTGGNGACACAGAGGACAGGTGACAACGAGGAGTCTTACCTCCAGA
GGCATCTGCCCAGGGCCTGGCTCCTTCCCTGTCTCCCGCACGGGACCCCCGGGCTTTCAG
GCCCTGCCGCCGCGGCTCCGTGGTTCTGCCTGGACTTAGCTCTTGCCCAGGCCACGGGGC
GTGCTCCCTCTGTCCTCACGGGAGCACAGGCCCCACGTGGCGCTTTCCTTGCTGTCACTG
TGTCGAAACGCAGGGAGATCCCTGTGCAGACCCGTGCCCACCTTGTCGCCCCTGCAGGAC
CAGGGCCCTGGCGCAGGGTCGCGCCAAGGCCGCCTTCCTTCCGGCTGGGCCATGGCCACC
CCGGATGTCAGCGTCCACATGGAGGAGGTGGTGGTGGTGACAACGCCCGACACGGCGGTG
GACGGCAGCGGCGTGGAGGAGGTGAAGACCGTGCTGGTCACCACCAACCTGGCCCCTCAC
GGGGGTGACCTGACGGAAGACAGCATGGAGACGGAAAATGCCGCCGCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACGCGGGACAGCGCTTCGGAGCAGAGACAGGACATGTCTCCGACAGTGTTCTGGGCACT
ACCCGGAGTTCAGGTTGGNGACACAGAGGACAGGTGACAACGAGGAGTCTTACCTCCAGA
GGCATCTGCCCAGGGCCTGGCTCCTTCCCTGTCTCCCGCACGGGACCCCCGGGCTTTCAG
GCCCTGCCGCCGCGGCTCCGTGGTTCTGCCTGGACTTAGCTCTTGCCCAGGCCACGGGGC
GTGCTCCCTCTGTCCTCACGGGAGCACAGGCCCCACGTGGCGCTTTCCTTGCTGTCACTG
TGTCGAAACGCAGGGAGATCCCTGTGCAGACCCGTGCCCACCTTGTCGCCCCTGCAGGAC
CAGGGCCCTGGCGCAGGGTCGCGCCAAGGCCGCCTTCCTTCCGGCTGGGCCATGGCCACC
CCGGATGTCAGCGTCCACATGGAGGAGGTGGTGGTGGTGACAACGCCCGACACGGCGGTG
GACGGCAGCGGCGTGGAGGAGGTGAAGACCGTGCTGGTCACCACCAACCTGGCCCCTCAC
GGGGGTGACCTGACGGAAGACAGCATGGAGACGGAAAATGCCGCCGCG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
373-543, gnl|bosTau2|chr13 (35416618-35416787) |
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373-543, gnl|canFam2|chr24 (50242961-50243098) |
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373-543, gnl|danRer3|chr13 (42634709-42634856) |
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373-543, gnl|echTel1|scaffold_196415 (137-4) |
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373-543, gnl|galGal2|chr20 (9364301-9364160) |
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373-543, gnl|hg17|chr20 (61721049-61721186) |
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373-543, gnl|Hg17|chr20 (61721254-61721063) |
|
373-543, gnl|loxAfr1|scaffold_174889 (187-320) |
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373-543, gnl|mm7|chr2 (181778845-181778983) |
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373-543, gnl|Mm7|chr2 (181779036-181778860) |
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373-543, gnl|monDom2|scaffold_1 (184121389-184121515) |
|
373-543, gnl|panTro1|chr21 (64784198-64784335) |
|
373-543, gnl|rheMac2|chr10 (737870-737733) |
|
373-543, gnl|rn3|chr3 (170325723-170325861) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
373-543, gnl|bosTau2|chr13 (35416618-35416787) |
|
373-543, gnl|canFam2|chr24 (50242961-50243098) |
|
373-543, gnl|danRer3|chr13 (42634709-42634856) |
|
373-543, gnl|echTel1|scaffold_196415 (137-4) |
|
373-543, gnl|galGal2|chr20 (9364301-9364160) |
|
373-543, gnl|hg17|chr20 (61721049-61721186) |
|
373-543, gnl|Hg17|chr20 (61721254-61721063) |
|
373-543, gnl|loxAfr1|scaffold_174889 (187-320) |
|
373-543, gnl|mm7|chr2 (181778845-181778983) |
|
373-543, gnl|Mm7|chr2 (181779036-181778860) |
|
373-543, gnl|monDom2|scaffold_1 (184121389-184121515) |
|
373-543, gnl|panTro1|chr21 (64784198-64784335) |
|
373-543, gnl|rheMac2|chr10 (737870-737733) |
|
373-543, gnl|rn3|chr3 (170325723-170325861) |
