Ss1.1-mCP1-MI-P-CP1-nwn-e-08-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGATTCGGGCAAAAGGCCTTCAAACTGCACTCTTGAGCAATAATTTTTTTCTTCCCA ATGGGAAAAGCTTTTTGCCCTTGGACCGGAAACAGTTTGATGTGGTCGTGGAGTCTTGCC TGGAAGGTATCTGTAAGCCAGACCCCAGGATCTACAAGCTGTGCTTAGAGCGGCTGGGCC GGAAGCCTTCTGAGTGCATCTTGCTTGAAGACTTAGGGCCGAATCTAAAAGCAGCTGCCA GTCTTGGTATTCACACCATTAAGGTTAATGACCCAGAGACTGCGGTGAAGGAATTGAAAA CTCTTTTGGGTTTTACGTTGAGAACGGTTGTTCCAAACACCCGCCCTGTGAGAAAGACAA TGGAAATTCCCAAAGATTCCTTGGAGAAGTACCTCAGAGACTTACTGGGGATCCAAACCA CAGGCCCACTGGAGCTCCTTCAGTTTGACCATGGGCAGTCAAATCCCACCTACTACATCA AGCTGGCTAACCAACAAATGGTTTTGAGGAAGAAACCCCCGGGGACACTCCTTCCATCTG CACATGCAGTGGAGAGGGAGTTCAGGATAATGAAAGCTCTTAAGAATGCTGGAGTCCCTG TCCCCAAAGTTCTTGACCTCTGTGAAGATTCAAGGATTGTTGGCACCCCCTTCTATGTGA TGGAGTACTGCTCAGGCCTCACCTACAAAGACCCCTCTCTGCCAGGCCTGGAGCCCAGCC AGAGGCAGGCCATCTACACTGCCATGAACAGAGTCTTGTGTAAGATTCACAGTGTGGACC TCAAGGCCACGGGCCTAGAAGACTATGGGAAACATGGGGACTATATTACCCGCCAGGTGC AAACATGGATCAAACAGTATAGAGCCACGGAAACCAGCACCATCCCGGCAATGGAGAGGC TCATCGAGTGGCTGCCACACCACCTTCCCAGTCAGCAGAGGACCACTGTGGTGCATGGGG ACTTCAGGCTGGACAACCTGCTTTTCCACCCGGAAACGAATGAGGTGCTTGCTGTCCTTG ATTGGGAACTTTCTACCTTAGGCGACCCCCTTGCTGATGTGGCCTATAGCTGCCTGGCTC ACTACCTGCCATCCAGTTTTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGATTCGGGCAAAAGGCCTTCAAACTGCACTCTTGAGCAATAATTTTTTTCTTCCCA ATGGGAAAAGCTTTTTGCCCTTGGACCGGAAACAGTTTGATGTGGTCGTGGAGTCTTGCC TGGAAGGTATCTGTAAGCCAGACCCCAGGATCTACAAGCTGTGCTTAGAGCGGCTGGGCC GGAAGCCTTCTGAGTGCATCTTGCTTGAAGACTTAGGGCCGAATCTAAAAGCAGCTGCCA GTCTTGGTATTCACACCATTAAGGTTAATGACCCAGAGACTGCGGTGAAGGAATTGAAAA CTCTTTTGGGTTTTACGTTGAGAACGGTTGTTCCAAACACCCGCCCTGTGAGAAAGACAA TGGAAATTCCCAAAGATTCCTTGGAGAAGTACCTCAGAGACTTACTGGGGATCCAAACCA CAGGCCCACTGGAGCTCCTTCAGTTTGACCATGGGCAGTCAAATCCCACCTACTACATCA AGCTGGCTAACCAACAAATGGTTTTGAGGAAGAAACCCCCGGGGACACTCCTTCCATCTG CACATGCAGTGGAGAGGGAGTTCAGGATAATGAAAGCTCTTAAGAATGCTGGAGTCCCTG TCCCCAAAGTTCTTGACCTCTGTGAAGATTCAAGGATTGTTGGCACCCCCTTCTATGTGA TGGAGTACTGCTCAGGCCTCACCTACAAAGACCCCTCTCTGCCAGGCCTGGAGCCCAGCC AGAGGCAGGCCATCTACACTGCCATGAACAGAGTCTTGTGTAAGATTCACAGTGTGGACC TCAAGGCCACGGGCCTAGAAGACTATGGGAAACATGGGGACTATATTACCCGCCAGGTGC AAACATGGATCAAACAGTATAGAGCCACGGAAACCAGCACCATCCCGGCAATGGAGAGGC TCATCGAGTGGCTGCCACACCACCTTCCCAGTCAGCAGAGGACCACTGTGGTGCATGGGG ACTTCAGGCTGGACAACCTGCTTTTCCACCCGGAAACGAATGAGGTGCTTGCTGTCCTTG ATTGGGAACTTTCTACCTTAGGCGACCCCCTTGCTGATGTGGCCTATAGCTGCCTGGCTC ACTACCTGCCATCCAGTTTTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-106, + strand, RNAz p=0.580871 | |
| 637-733, - strand, RNAz p=0.534198 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-106, + strand, RNAz p=0.580871 | |
| 637-733, - strand, RNAz p=0.534198 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr17 (30987020-30986915) | |
| 1-106, gnl|Hg17|chr12 (110606353-110606458) | |
| 1-106, gnl|Mm7|chr5 (120883719-120883614) | |
| 262-424, gnl|bosTau2|chr17 (30982314-30982152) | |
| 262-424, gnl|canFam2|chr26 (12285708-12285947) | |
| 262-424, gnl|echTel1|scaffold_305205 (40204-39959) | |
| 262-424, gnl|galGal2|chr15 (6148631-6148873) | |
| 262-424, gnl|hg17|chr12 (110612990-110613254) | |
| 262-424, gnl|Hg17|chr12 (110613020-110613182) | |
| 262-424, gnl|loxAfr1|scaffold_42919 (10032-10279) | |
| 262-424, gnl|mm7|chr5 (120881139-120880896) | |
| 262-424, gnl|Mm7|chr5 (120881125-120880963) | |
| 262-424, gnl|monDom2|scaffold_203 (379870-379623) | |
| 262-424, gnl|oryCun1|scaffold_183285 (9535-9289) | |
| 262-424, gnl|panTro1|chr10 (113220061-113220325) | |
| 262-424, gnl|rheMac2|chr11 (112653627-112653891) | |
| 637-820, gnl|bosTau2|chr17 (30973056-30972873) | |
| 637-820, gnl|canFam2|chr26 (12294288-12294524) | |
| 637-820, gnl|dasNov1|scaffold_168167 (4651-4883) | |
| 637-820, gnl|echTel1|scaffold_305205 (35761-35541) | |
| 637-820, gnl|galGal2|chr15 (6150551-6150802) | |
| 637-820, gnl|hg17|chr12 (110628445-110628679) | |
| 637-820, gnl|Hg17|chr12 (110628488-110628671) | |
| 637-820, gnl|loxAfr1|scaffold_74644 (3006-3241) | |
| 637-820, gnl|mm7|chr5 (120873602-120873376) | |
| 637-820, gnl|Mm7|chr5 (120873565-120873382) | |
| 637-820, gnl|monDom2|scaffold_203 (365193-364958) | |
| 637-820, gnl|oryCun1|scaffold_183285 (1411-1190) | |
| 637-820, gnl|panTro1|chr10 (113232927-113233161) | |
| 637-820, gnl|xenTro1|scaffold_501 (146904-147134) | |
| 962-1104, gnl|bosTau2|chr17 (30967181-30967039) | |
| 962-1104, gnl|Hg17|chr12 (110634442-110634583) | |
| 962-1104, gnl|Mm7|chr5 (120869089-120868948) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr17 (30987020-30986915) | |
| 1-106, gnl|Hg17|chr12 (110606353-110606458) | |
| 1-106, gnl|Mm7|chr5 (120883719-120883614) | |
| 262-424, gnl|bosTau2|chr17 (30982314-30982152) | |
| 262-424, gnl|canFam2|chr26 (12285708-12285947) | |
| 262-424, gnl|echTel1|scaffold_305205 (40204-39959) | |
| 262-424, gnl|galGal2|chr15 (6148631-6148873) | |
| 262-424, gnl|hg17|chr12 (110612990-110613254) | |
| 262-424, gnl|Hg17|chr12 (110613020-110613182) | |
| 262-424, gnl|loxAfr1|scaffold_42919 (10032-10279) | |
| 262-424, gnl|mm7|chr5 (120881139-120880896) | |
| 262-424, gnl|Mm7|chr5 (120881125-120880963) | |
| 262-424, gnl|monDom2|scaffold_203 (379870-379623) | |
| 262-424, gnl|oryCun1|scaffold_183285 (9535-9289) | |
| 262-424, gnl|panTro1|chr10 (113220061-113220325) | |
| 262-424, gnl|rheMac2|chr11 (112653627-112653891) | |
| 637-820, gnl|bosTau2|chr17 (30973056-30972873) | |
| 637-820, gnl|canFam2|chr26 (12294288-12294524) | |
| 637-820, gnl|dasNov1|scaffold_168167 (4651-4883) | |
| 637-820, gnl|echTel1|scaffold_305205 (35761-35541) | |
| 637-820, gnl|galGal2|chr15 (6150551-6150802) | |
| 637-820, gnl|hg17|chr12 (110628445-110628679) | |
| 637-820, gnl|Hg17|chr12 (110628488-110628671) | |
| 637-820, gnl|loxAfr1|scaffold_74644 (3006-3241) | |
| 637-820, gnl|mm7|chr5 (120873602-120873376) | |
| 637-820, gnl|Mm7|chr5 (120873565-120873382) | |
| 637-820, gnl|monDom2|scaffold_203 (365193-364958) | |
| 637-820, gnl|oryCun1|scaffold_183285 (1411-1190) | |
| 637-820, gnl|panTro1|chr10 (113232927-113233161) | |
| 637-820, gnl|xenTro1|scaffold_501 (146904-147134) | |
| 962-1104, gnl|bosTau2|chr17 (30967181-30967039) | |
| 962-1104, gnl|Hg17|chr12 (110634442-110634583) | |
| 962-1104, gnl|Mm7|chr5 (120869089-120868948) |