Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nza-d-18-0-UI.s1.3

Sequence:


               
               GGAGGAGCTGTTCCGGNACACGCCCCTGGGGCCTGG------------GGCGCCGCTGGA
AGCCCTACTTGCTGCCCGTGCTCTCGGACGCCTCCAGGATCGCGCTCCTGTGGAAGTTCG
GGGGCATCTACCTGGACACGGACTTCATCGTCCTCAAGAACCTGCGGAACCTGACCAACG
CGCTGGGCACCCAGTCCCGCTACGTCCTCAACGGCGCCTTCCTGGCCTTCGAGCGCCACC
ACGAGTTCATGGCGCTGTGCATGCGCGACTTTGTGGCCCACTACAACGGCTGGATCTGGG
GCCACCAGGGCCCGCAGCTGCTCACGCGGGTCTTCAAAAAGTGGTGCTCCATCCGCAGCC
TGCGCCAGAGCCACAGCTGCCGCGGCGTCACTGCCCTGCCCTCCGAGGCCTTCTACCCCA
TCCCCTGGCAGGACTGGAAGAAGTACTTTGAGGACATCAGCCCCGAGGCGCTGCCCCGGC
TCCTCAATGCCACCTACGCCGTCCACGTGTGGAACAAGAAGAGCCAGGGCACACGCCTCG
AGGTCACGTCCCAGGCCCTGCTGGCCCAGCTCCAGGCCCGCTACTGCCCGGCCACGCACG
AGGTCATGAAGATGTACTCGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGCTGTTCCGGNACACGCCCCTGGGGCCTGG------------GGCGCCGCTGGA
AGCCCTACTTGCTGCCCGTGCTCTCGGACGCCTCCAGGATCGCGCTCCTGTGGAAGTTCG
GGGGCATCTACCTGGACACGGACTTCATCGTCCTCAAGAACCTGCGGAACCTGACCAACG
CGCTGGGCACCCAGTCCCGCTACGTCCTCAACGGCGCCTTCCTGGCCTTCGAGCGCCACC
ACGAGTTCATGGCGCTGTGCATGCGCGACTTTGTGGCCCACTACAACGGCTGGATCTGGG
GCCACCAGGGCCCGCAGCTGCTCACGCGGGTCTTCAAAAAGTGGTGCTCCATCCGCAGCC
TGCGCCAGAGCCACAGCTGCCGCGGCGTCACTGCCCTGCCCTCCGAGGCCTTCTACCCCA
TCCCCTGGCAGGACTGGAAGAAGTACTTTGAGGACATCAGCCCCGAGGCGCTGCCCCGGC
TCCTCAATGCCACCTACGCCGTCCACGTGTGGAACAAGAAGAGCCAGGGCACACGCCTCG
AGGTCACGTCCCAGGCCCTGCTGGCCCAGCTCCAGGCCCGCTACTGCCCGGCCACGCACG
AGGTCATGAAGATGTACTCGTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|25452793|sp|Q9N289|A4GAT_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|25452793|sp|Q9N289|A4GAT_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-546, - strand, RNAz p=0.922788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-546, - strand, RNAz p=0.922788

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-612, gnl|bosTau2|chr5 (69060779-69060205)
               

               
               38-612, gnl|Hg17|chr22 (41413967-41413394)
               

               
               38-612, gnl|Mm7|chr15 (83312471-83311898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-612, gnl|bosTau2|chr5 (69060779-69060205)
               

               
               38-612, gnl|Hg17|chr22 (41413967-41413394)
               

               
               38-612, gnl|Mm7|chr15 (83312471-83311898)

	38-612, gnl\|bosTau2\|chr5 (69060779-69060205)
	38-612, gnl\|Hg17\|chr22 (41413967-41413394)
	38-612, gnl\|Mm7\|chr15 (83312471-83311898)