Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-c-05-0-UI.s1.3

Sequence:


               
               AAGAGCGGCGGGGGCTGCAGGAGGCAAGAGAGACGGATGCCTGGCCACCATGGGGTGCAG
GTTGGCTGCAGAGTCACAGGCTCATTGAAGACTGAGGTATAAACATTGGATCCAGAACTG
CTGATTGATAGAGGCTGGCACTGCCTTCTGCACGATGGCTGAGGTGGCTGAGGTGGCCGA
GATGCCAACACAGATGTCACCAGGGGCAATGGAGATGTCCACACCGATGTTAGGGGAGAA
GACAGAGAGGTCAGCAGAGGTGACTGAGATAGCACCAGGGGAGGCCCTTGCCTCCTCCCT
TTTCTTCCAGTTCATGTGCTCTGAGTGTGGCAGCCTCTACAACACCCTGGAGGAAGTCCT
CTCCCACCAGGAGCAGCATGTGCCCACTGTCATGGAGGAGGAGGCGCTGACCTCCCAGGA
CACCTGCCTGGAGCCAGAGCTGGTGCCAGGCCCTGAGGATGGGCCTTTCCAGTGTGCTGA
GTGCAGCCAGCTCATCCTTTCCCCCAGTGAGCTCTTGGCCCATCAGGATGCCCACCTGCG
GGAATCTGCAAGCCAGATCCAGTACCAGTGTGGAGACTGCCAGGAGCTGTTTCCCTCGCC
GGAGCTGTGGGTGGCTCACCGCAAGGCCCAGCACCTTTCTGCCGCAGCAGTTAAACCTCC
AGTGCCTCCCTCCTCTGCCTCCCCTCACACCACCACCTCCATCCCCTGCTCCACCCGAAG
TCAAGATGGAGCCTTATGAGTGTCCTGAGTGCTCTACCCTCTGTACCAGCCCTGAGGAGT
TCTTAGAGCATCAAGGCACCCACTTTGACTCCCTTGAGAAAGAGGAGCGCAATGGGCTAG
AGGAGGAAGAGGAGGAGGAGGAAGATGATGATGAAGAGACAGAGGATGAAGAAGAGGCAG
CAGCAGAAGTTGGCGACAATGCTATGGAAGGTGACAAGTCTGTAGCCAGCCAGGCCCAGG
GCTGTGGGGATTGTCCCCAACACTGGACTTCAGCAGGGGCACGTCGGCGACACCGGCGCA
CATCCCGGGGCCCAGCATCAGCGGCTCACCCCTTCCACTGCAGCCAGTGCCAGCGCAGCT
TCAGCTCCGCAAACCGGCTTCTGGCTCATGGGCGGGCCCATGTTGGTGGCACACACGAGT
GTACGACCTGCTCCAAGGTCTTCAAGAAAGCAGCCTCCCTGGAGCAGCACCTGCGGCTAC
ACCGCGGTGAAGCCCGCTACCTCTGCGTGGACTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCGGCGGGGGCTGCAGGAGGCAAGAGAGACGGATGCCTGGCCACCATGGGGTGCAG
GTTGGCTGCAGAGTCACAGGCTCATTGAAGACTGAGGTATAAACATTGGATCCAGAACTG
CTGATTGATAGAGGCTGGCACTGCCTTCTGCACGATGGCTGAGGTGGCTGAGGTGGCCGA
GATGCCAACACAGATGTCACCAGGGGCAATGGAGATGTCCACACCGATGTTAGGGGAGAA
GACAGAGAGGTCAGCAGAGGTGACTGAGATAGCACCAGGGGAGGCCCTTGCCTCCTCCCT
TTTCTTCCAGTTCATGTGCTCTGAGTGTGGCAGCCTCTACAACACCCTGGAGGAAGTCCT
CTCCCACCAGGAGCAGCATGTGCCCACTGTCATGGAGGAGGAGGCGCTGACCTCCCAGGA
CACCTGCCTGGAGCCAGAGCTGGTGCCAGGCCCTGAGGATGGGCCTTTCCAGTGTGCTGA
GTGCAGCCAGCTCATCCTTTCCCCCAGTGAGCTCTTGGCCCATCAGGATGCCCACCTGCG
GGAATCTGCAAGCCAGATCCAGTACCAGTGTGGAGACTGCCAGGAGCTGTTTCCCTCGCC
GGAGCTGTGGGTGGCTCACCGCAAGGCCCAGCACCTTTCTGCCGCAGCAGTTAAACCTCC
AGTGCCTCCCTCCTCTGCCTCCCCTCACACCACCACCTCCATCCCCTGCTCCACCCGAAG
TCAAGATGGAGCCTTATGAGTGTCCTGAGTGCTCTACCCTCTGTACCAGCCCTGAGGAGT
TCTTAGAGCATCAAGGCACCCACTTTGACTCCCTTGAGAAAGAGGAGCGCAATGGGCTAG
AGGAGGAAGAGGAGGAGGAGGAAGATGATGATGAAGAGACAGAGGATGAAGAAGAGGCAG
CAGCAGAAGTTGGCGACAATGCTATGGAAGGTGACAAGTCTGTAGCCAGCCAGGCCCAGG
GCTGTGGGGATTGTCCCCAACACTGGACTTCAGCAGGGGCACGTCGGCGACACCGGCGCA
CATCCCGGGGCCCAGCATCAGCGGCTCACCCCTTCCACTGCAGCCAGTGCCAGCGCAGCT
TCAGCTCCGCAAACCGGCTTCTGGCTCATGGGCGGGCCCATGTTGGTGGCACACACGAGT
GTACGACCTGCTCCAAGGTCTTCAAGAAAGCAGCCTCCCTGGAGCAGCACCTGCGGCTAC
ACCGCGGTGAAGCCCGCTACCTCTGCGTGGACTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69Z58_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69Z58_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               156-545, - strand, RNAz p=0.966671
               

               
               698-884, - strand, RNAz p=0.961976
               

               
               1000-1236, - strand, RNAz p=0.79926

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-545, - strand, RNAz p=0.966671
               

               
               698-884, - strand, RNAz p=0.961976
               

               
               1000-1236, - strand, RNAz p=0.79926

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               731-844, - strand, RNAmicro p=0.999997
               

               
               736-829, + strand, RNAmicro p=0.999949
               

               
               1006-1130, - strand, RNAmicro p=0.981452
               

               
               1076-1165, + strand, RNAmicro p=0.976097

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               731-844, - strand, RNAmicro p=0.999997
               

               
               736-829, + strand, RNAmicro p=0.999949
               

               
               1006-1130, - strand, RNAmicro p=0.981452
               

               
               1076-1165, + strand, RNAmicro p=0.976097

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               36-138, gnl|bosTau2|chr18 (44942742-44942844)
               

               
               36-138, gnl|Hg17|chr19 (47420206-47420298)
               

               
               36-138, gnl|Mm7|chr7 (22013154-22013248)
               


               
               156-1236, gnl|bosTau2|chr18 (44942963-44944042)
               

               
               156-1236, gnl|Hg17|chr19 (47420409-47421491)
               

               
               156-1236, gnl|Mm7|chr7 (22013371-22014474)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-138, gnl|bosTau2|chr18 (44942742-44942844)
               

               
               36-138, gnl|Hg17|chr19 (47420206-47420298)
               

               
               36-138, gnl|Mm7|chr7 (22013154-22013248)
               


               
               156-1236, gnl|bosTau2|chr18 (44942963-44944042)
               

               
               156-1236, gnl|Hg17|chr19 (47420409-47421491)
               

               
               156-1236, gnl|Mm7|chr7 (22013371-22014474)

	156-545, - strand, RNAz p=0.966671
	698-884, - strand, RNAz p=0.961976
	1000-1236, - strand, RNAz p=0.79926

	731-844, - strand, RNAmicro p=0.999997
	736-829, + strand, RNAmicro p=0.999949
	1006-1130, - strand, RNAmicro p=0.981452
	1076-1165, + strand, RNAmicro p=0.976097

	36-138, gnl\|bosTau2\|chr18 (44942742-44942844)
	36-138, gnl\|Hg17\|chr19 (47420206-47420298)
	36-138, gnl\|Mm7\|chr7 (22013154-22013248)

	156-1236, gnl\|bosTau2\|chr18 (44942963-44944042)
	156-1236, gnl\|Hg17\|chr19 (47420409-47421491)
	156-1236, gnl\|Mm7\|chr7 (22013371-22014474)