Ss1.1-mCP1-MI-P-CP1-nzd-p-15-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCTGCTGGGAGCGGGAGCCGAGGGCTGCCCCCCTCCAGCCCCATGGTCAGCAGTGCCC ACAACCCCAACAAGGCAGAGATCCCAGAGCGACGGAAGGACAGCACGAGCACCCCTAACA ACCTCCCTCCCAGCATGATGACCCGCAGAAACACCTATGTTTGCACAGAACGCCCAGGGG CTGAGCGCCCGTCCCTGTTGCCAAATGGCAAAGAAAACAGCTCGGGTACCCCACGGGTGC CCCCCGCCTCCCCCTCCAGTCACAGCCTGGCTCCCCCATCGGGGGAGCGGAGCCGCCTGG CACGCGGCTCCACCATCCGCAGCACCTTCCACGGTGGCCAGGTCCGAGACAGGCGGGCAG GGGGCGGGGGAGGTGGGGGCGTGCAGAACGGGCCCCCCGCCTCTCCCACCCTGGCCCACG AGGCCACGCCCCTGCCCACTGGGCGGCCCCGCCCCACCACCAACCTCTTCACCAAGCTGA CCTCCAAACTGACCCGAAGGGTCACAGACGAACCTGAGAGAATCGGGGGACCTGAGGTCA CAAGTTGCCATCTACCTTGGGATCAAACGGAAACCGCCCCCCGGCTGCTCCGATTCCCCT GGAGTGTGAAGCTGACCAGCTCGCGCCCGCCCGAGGCCCTGATGGCAGCTCTGCGCCAGG CCACCGCGGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCTGCTGGGAGCGGGAGCCGAGGGCTGCCCCCCTCCAGCCCCATGGTCAGCAGTGCCC ACAACCCCAACAAGGCAGAGATCCCAGAGCGACGGAAGGACAGCACGAGCACCCCTAACA ACCTCCCTCCCAGCATGATGACCCGCAGAAACACCTATGTTTGCACAGAACGCCCAGGGG CTGAGCGCCCGTCCCTGTTGCCAAATGGCAAAGAAAACAGCTCGGGTACCCCACGGGTGC CCCCCGCCTCCCCCTCCAGTCACAGCCTGGCTCCCCCATCGGGGGAGCGGAGCCGCCTGG CACGCGGCTCCACCATCCGCAGCACCTTCCACGGTGGCCAGGTCCGAGACAGGCGGGCAG GGGGCGGGGGAGGTGGGGGCGTGCAGAACGGGCCCCCCGCCTCTCCCACCCTGGCCCACG AGGCCACGCCCCTGCCCACTGGGCGGCCCCGCCCCACCACCAACCTCTTCACCAAGCTGA CCTCCAAACTGACCCGAAGGGTCACAGACGAACCTGAGAGAATCGGGGGACCTGAGGTCA CAAGTTGCCATCTACCTTGGGATCAAACGGAAACCGCCCCCCGGCTGCTCCGATTCCCCT GGAGTGTGAAGCTGACCAGCTCGCGCCCGCCCGAGGCCCTGATGGCAGCTCTGCGCCAGG CCACCGCGGCCG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 217-335, - strand, RNAz p=0.959716 | |
| 368-487, - strand, RNAz p=0.917859 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 217-335, - strand, RNAz p=0.959716 | |
| 368-487, - strand, RNAz p=0.917859 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 3-116, gnl|bosTau2|chr18 (38623592-38623479) | |
| 3-116, gnl|canFam2|chr1 (113122082-113121843) | |
| 3-116, gnl|danRer3|chr16 (16336628-16336856) | |
| 3-116, gnl|dasNov1|scaffold_18750 (22574-22333) | |
| 3-116, gnl|echTel1|scaffold_217267 (3726-3919) | |
| 3-116, gnl|fr1|chrUn (89463682-89463444) | |
| 3-116, gnl|hg17|chr19 (50482542-50482781) | |
| 3-116, gnl|Hg17|chr19 (50482649-50482762) | |
| 3-116, gnl|loxAfr1|scaffold_162737 (555-794) | |
| 3-116, gnl|mm7|chr7 (17115915-17115663) | |
| 3-116, gnl|Mm7|chr7 (17115806-17115693) | |
| 3-116, gnl|monDom2|scaffold_361 (56052-55816) | |
| 3-116, gnl|oryCun1|scaffold_175213 (19105-18907) | |
| 3-116, gnl|panTro1|chr20 (47665350-47665589) | |
| 3-116, gnl|rheMac2|chr19 (51721985-51722224) | |
| 3-116, gnl|rn3|chr1 (78862762-78862523) | |
| 3-116, gnl|tetNig1|chr16 (6582572-6582804) | |
| 217-500, gnl|bosTau2|chr18 (38618913-38618622) | |
| 217-500, gnl|Hg17|chr19 (50492770-50493053) | |
| 217-500, gnl|Mm7|chr7 (17111982-17111699) | |
| 543-672, gnl|bosTau2|chr18 (38615984-38615855) | |
| 543-672, gnl|Hg17|chr19 (50497470-50497599) | |
| 543-672, gnl|Mm7|chr7 (17108787-17108658) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-116, gnl|bosTau2|chr18 (38623592-38623479) | |
| 3-116, gnl|canFam2|chr1 (113122082-113121843) | |
| 3-116, gnl|danRer3|chr16 (16336628-16336856) | |
| 3-116, gnl|dasNov1|scaffold_18750 (22574-22333) | |
| 3-116, gnl|echTel1|scaffold_217267 (3726-3919) | |
| 3-116, gnl|fr1|chrUn (89463682-89463444) | |
| 3-116, gnl|hg17|chr19 (50482542-50482781) | |
| 3-116, gnl|Hg17|chr19 (50482649-50482762) | |
| 3-116, gnl|loxAfr1|scaffold_162737 (555-794) | |
| 3-116, gnl|mm7|chr7 (17115915-17115663) | |
| 3-116, gnl|Mm7|chr7 (17115806-17115693) | |
| 3-116, gnl|monDom2|scaffold_361 (56052-55816) | |
| 3-116, gnl|oryCun1|scaffold_175213 (19105-18907) | |
| 3-116, gnl|panTro1|chr20 (47665350-47665589) | |
| 3-116, gnl|rheMac2|chr19 (51721985-51722224) | |
| 3-116, gnl|rn3|chr1 (78862762-78862523) | |
| 3-116, gnl|tetNig1|chr16 (6582572-6582804) | |
| 217-500, gnl|bosTau2|chr18 (38618913-38618622) | |
| 217-500, gnl|Hg17|chr19 (50492770-50493053) | |
| 217-500, gnl|Mm7|chr7 (17111982-17111699) | |
| 543-672, gnl|bosTau2|chr18 (38615984-38615855) | |
| 543-672, gnl|Hg17|chr19 (50497470-50497599) | |
| 543-672, gnl|Mm7|chr7 (17108787-17108658) |