Non-Coding RNA Search

Ss1.1-mE7-MI-P-E7-aha-c-05-1-UM.s1.3

Sequence:


               
               ACATTCAGAAGGCTTTGGTCATTGCCCACAGCAACATTGAAATGGCCAAAAATATCCTCC
GAGAATTTGTTACCATTTCCTCTCCTGCCCATGTAGCCACATAGCACACCCCGTCCCTGC
CCAGTCAGAGGACCGAGGACCCGTGAGCTCTTGCTCGAGTAGCACCTGAAAGGGCAGAGA
GGTTCCTTTGGAGACTTCACAGTCTTGCCCTGTCTGTGGGGTATCACATCTGTGGTTCCA
AGATTTCAAAGCAGTGGAATGAGAACGGAGCAGCTAGAATATTTTCTTATTTTATTTTAT
TTGTTTTGAGAGTGCATTTGAAGGTGTCCTTTGGTCCCCACTTAGAGTGTGGATTTTTAT
TAAGTGGTAGCCTACCTGGGGAACAATCCAGAAGGCAGTAGGAGAAGTACTGTGCTGTAA
ATCCTAATTGAGGACTTCAGACTTTCCTGGGTTAAGGATGTGGTGGTGTGTGTCTTGTCT
GTCTGTCTGTGGTTGTGTGTGTCCTGTGATGAANAGATTAACCTGCTGTGTGTGTTAATC
CTTTGCAGGGAATTAGCACAAAAGGTTTAGGAGGGGGTCTTAAAGACTTCCCATCTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTCAGAAGGCTTTGGTCATTGCCCACAGCAACATTGAAATGGCCAAAAATATCCTCC
GAGAATTTGTTACCATTTCCTCTCCTGCCCATGTAGCCACATAGCACACCCCGTCCCTGC
CCAGTCAGAGGACCGAGGACCCGTGAGCTCTTGCTCGAGTAGCACCTGAAAGGGCAGAGA
GGTTCCTTTGGAGACTTCACAGTCTTGCCCTGTCTGTGGGGTATCACATCTGTGGTTCCA
AGATTTCAAAGCAGTGGAATGAGAACGGAGCAGCTAGAATATTTTCTTATTTTATTTTAT
TTGTTTTGAGAGTGCATTTGAAGGTGTCCTTTGGTCCCCACTTAGAGTGTGGATTTTTAT
TAAGTGGTAGCCTACCTGGGGAACAATCCAGAAGGCAGTAGGAGAAGTACTGTGCTGTAA
ATCCTAATTGAGGACTTCAGACTTTCCTGGGTTAAGGATGTGGTGGTGTGTGTCTTGTCT
GTCTGTCTGTGGTTGTGTGTGTCCTGTGATGAANAGATTAACCTGCTGTGTGTGTTAATC
CTTTGCAGGGAATTAGCACAAAAGGTTTAGGAGGGGGTCTTAAAGACTTCCCATCTACTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               350-468, - strand, RNAz p=0.991674
               

               
               488-600, + strand, RNAz p=0.801746

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-468, - strand, RNAz p=0.991674
               

               
               488-600, + strand, RNAz p=0.801746

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005188, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005188, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr15 (14382794-14383390)
               

               
               1-600, gnl|Hg17|chr11 (118675598-118676200)
               

               
               1-600, gnl|Mm7|chr9 (44085893-44085326)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr15 (14382794-14383390)
               

               
               1-600, gnl|Hg17|chr11 (118675598-118676200)
               

               
               1-600, gnl|Mm7|chr9 (44085893-44085326)

	350-468, - strand, RNAz p=0.991674
	488-600, + strand, RNAz p=0.801746

	1-600, gnl\|bosTau2\|chr15 (14382794-14383390)
	1-600, gnl\|Hg17\|chr11 (118675598-118676200)
	1-600, gnl\|Mm7\|chr9 (44085893-44085326)