Ss1.1-mH3-MI-P-H3-afk-e-05-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCATTTGCATCCTCAGCTGCCCTCTGGCTTGTCAGATGCTTTCTGTAGACCTACTTCTG GGTCCCAGTCAATGGGGGTCCAGGACTCCTCTCACACAAACACATCTCTGGAGGCTGGGC CTCCTGAAAAGTGTTCCCTTGGGGTATCTGTGTGACAACCCCATCCCTATTCACATTTTT GGGGACCCCCTACCCCGCCAGCCAGGGCTATCGGAAAGGTAGTTTGCCAGCTCAGTGAGC CAGTTCATTCGCTCTGTTGGTGAGTGGAAAGCCACACACCTTTCCCCATTTTACCCTAGG AAATTCACTTTTCCCCATCCCTTGAAAGTCCCTTCTGCAATCTGACCTCAATCTTTTGTG CTGCAGTTTGTCCAGAGGGGACGCAGATGTGGGGTCAGGGATGGGGATCATTGAAAAACT CATCACCTCTTTTTTTCCCCTTTTCCCTGTTAGCCGGTCAGATCTCAGAGACTCTGAGTG GCCTTCCTGTACCCTGCTTTTCAGCACCCAGTAGGTGCTTAATATGTGTTTGCTGCATTG AACTGTCTCCTTGCTCTTTCCCACTTGCCCTCCTGGCTCCCAATACCTCCCCCTGCCCTG CCCCCTCCCACGTTTTCTTCTCTCTCTGGTTCCCTAAGCCTTTCTACTTTCCCTCCCTTG TGGCTCCCACTGTTACCTGTACCATCTCTTATCTTTGTCTAGAGCTGTCTTTCCCTCTCC TCAACTCTCAACCCTCTCCCTTAGTCTCTTTCCCTATTAATTAAAAAAAAGTGCCAAACT TCCTTGGAACTGAGCCGATCTAGGGGGAGGGAACCTCAGATAGAGGGGAGGAGATGGGAC TGTCTCTCTTTGAGGAGGCCCCTAAGAGGCACTGAAAAATCCGTGGACACTTAGCTCAAT TGGGTCCCCCTTCCTGACCCCTCCCACCCCCTGAGTTTTTCGTTAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCATTTGCATCCTCAGCTGCCCTCTGGCTTGTCAGATGCTTTCTGTAGACCTACTTCTG GGTCCCAGTCAATGGGGGTCCAGGACTCCTCTCACACAAACACATCTCTGGAGGCTGGGC CTCCTGAAAAGTGTTCCCTTGGGGTATCTGTGTGACAACCCCATCCCTATTCACATTTTT GGGGACCCCCTACCCCGCCAGCCAGGGCTATCGGAAAGGTAGTTTGCCAGCTCAGTGAGC CAGTTCATTCGCTCTGTTGGTGAGTGGAAAGCCACACACCTTTCCCCATTTTACCCTAGG AAATTCACTTTTCCCCATCCCTTGAAAGTCCCTTCTGCAATCTGACCTCAATCTTTTGTG CTGCAGTTTGTCCAGAGGGGACGCAGATGTGGGGTCAGGGATGGGGATCATTGAAAAACT CATCACCTCTTTTTTTCCCCTTTTCCCTGTTAGCCGGTCAGATCTCAGAGACTCTGAGTG GCCTTCCTGTACCCTGCTTTTCAGCACCCAGTAGGTGCTTAATATGTGTTTGCTGCATTG AACTGTCTCCTTGCTCTTTCCCACTTGCCCTCCTGGCTCCCAATACCTCCCCCTGCCCTG CCCCCTCCCACGTTTTCTTCTCTCTCTGGTTCCCTAAGCCTTTCTACTTTCCCTCCCTTG TGGCTCCCACTGTTACCTGTACCATCTCTTATCTTTGTCTAGAGCTGTCTTTCCCTCTCC TCAACTCTCAACCCTCTCCCTTAGTCTCTTTCCCTATTAATTAAAAAAAAGTGCCAAACT TCCTTGGAACTGAGCCGATCTAGGGGGAGGGAACCTCAGATAGAGGGGAGGAGATGGGAC TGTCTCTCTTTGAGGAGGCCCCTAAGAGGCACTGAAAAATCCGTGGACACTTAGCTCAAT TGGGTCCCCCTTCCTGACCCCTCCCACCCCCTGAGTTTTTCGTTAGAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 38-571, - strand, RNAz p=0.999791 | |
| 726-918, - strand, RNAz p=0.999848 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 38-571, - strand, RNAz p=0.999791 | |
| 726-918, - strand, RNAz p=0.999848 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 76-425, DB293637 VESEN2 Homo sapiens cDNA clone VESEN2000317 5', mRNA (dbj|DB293637.1|), blast E-value=0, identity=87.22% | |
| 76-425, BX091732 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (emb|BX091732.1|), blast E-value=0, identity=87.78% | |
| 186-542, ij61a08.x1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BM876316.1|), blast E-value=0, identity=84.24% | |
| 76-364, ij61a08.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BM876577.1|), blast E-value=0, identity=86.62% | |
| 76-392, im85c08.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BU579480.1|), blast E-value=0, identity=87.46% | |
| 315-297, TC105822 Human adult whole brain, large insert, pCMV expression (gb|DN990745.1|), blast E-value=0, identity=88% | |
| 771-913, 148679 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE664282.1|), blast E-value=7.9874e-44, identity=91.1% | |
| 771-913, UMC-bcl_0A01-019-e05 Day 14 CL from a non-pregnant animal bcl Bos (gb|CV974650.1|), blast E-value=1.4013e-45, identity=91.78% | |
| 771-913, 1403193 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN740745.1|), blast E-value=1.4013e-45, identity=91.78% | |
| 771-915, JHU036D06L619 Canine cardiovascular system biased cDNA Canis (gb|DR103502.1|), blast E-value=4.99983e-42, identity=91.78% | |
| 771-913, 1593989 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY461241.1|), blast E-value=2.99878e-43, identity=91.1% | |
| 771-913, 1599525 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462404.1|), blast E-value=2.99878e-43, identity=91.1% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 76-425, DB293637 VESEN2 Homo sapiens cDNA clone VESEN2000317 5', mRNA (dbj|DB293637.1|), blast E-value=0, identity=87.22% | |
| 76-425, BX091732 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (emb|BX091732.1|), blast E-value=0, identity=87.78% | |
| 186-542, ij61a08.x1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BM876316.1|), blast E-value=0, identity=84.24% | |
| 76-364, ij61a08.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BM876577.1|), blast E-value=0, identity=86.62% | |
| 76-392, im85c08.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb|BU579480.1|), blast E-value=0, identity=87.46% | |
| 315-297, TC105822 Human adult whole brain, large insert, pCMV expression (gb|DN990745.1|), blast E-value=0, identity=88% | |
| 771-913, 148679 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE664282.1|), blast E-value=7.9874e-44, identity=91.1% | |
| 771-913, UMC-bcl_0A01-019-e05 Day 14 CL from a non-pregnant animal bcl Bos (gb|CV974650.1|), blast E-value=1.4013e-45, identity=91.78% | |
| 771-913, 1403193 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN740745.1|), blast E-value=1.4013e-45, identity=91.78% | |
| 771-915, JHU036D06L619 Canine cardiovascular system biased cDNA Canis (gb|DR103502.1|), blast E-value=4.99983e-42, identity=91.78% | |
| 771-913, 1593989 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY461241.1|), blast E-value=2.99878e-43, identity=91.1% | |
| 771-913, 1599525 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462404.1|), blast E-value=2.99878e-43, identity=91.1% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-948, gnl|bosTau2|chr18 (49608667-49609593) | |
| 1-948, gnl|Hg17|chr19 (51132431-51131487) | |
| 1-948, gnl|Mm7|chr7 (16643633-16644477) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-948, gnl|bosTau2|chr18 (49608667-49609593) | |
| 1-948, gnl|Hg17|chr19 (51132431-51131487) | |
| 1-948, gnl|Mm7|chr7 (16643633-16644477) |