Non-Coding RNA Search

Ss1.1-reje39b_p7.5

Sequence:


               
               CAGCGGCGTTGCTTACGGGGTAAACATGGCCGCCGCAGGGGAGGCTGTGACTCCAAGGTA
GCTCCACGGCGGCGGTCCCGAGCACAGCCACTGCCTCCGCTTCTCCCGTCACAGCCTCCA
TAGTCTCCAGAGCTGCACCCCATAACCCTGGCCCCCTTGCCACGTGCCGAATTCATCTAT
TACTGTGTAGACGAGGACGAGCTACCTTATACGAACCGCCGGCAGAATCGCAAGTGTGGG
GCCTGTACAGCCTGCCTGCGGCGGATGGACTGTGGCCACTGTGACTTCTGCTGTGACAAG
CCCAAATTTGGGGGCAGCAACCAGAAGCGCCAGAAATGTCGTTGGCGCCAATGCCTGCAG
TTTGCTATGAAGCGGCTGCTGCCAAGTGTCTGGGCAGGGTCTGAGGATGGGTCAGAGCCG
CCCCCACCTTACCCTCGTCGAAAAAGGCCTTGCTCTACTCGAAGGCCTCGTCTGGGTCAG
ACCCTGAAGCCTGATGACTCTGCCTCTGACTTGGCCCCAGAGGAGGAGGCAGGAGGGGCT
GGCACGCCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCCTCCGGGACACAGCA
GTCTGGTTGCCAAGGTCCAAGGACCTTAAAAAACCTGGAGCTAGAAAGCAGTAGACTGGA
GGCTTCTGCAGACTGTAGGACTCAAGGGATTGACCTTATGCAGTGGTGGGAGCATTGAAC
AGTCTCTTAAGGCTGTCGTCTTTGCATCTAATGCTGGAGCTTGAAGTCTGCAGGACAGGC
AATCGAGAAGGGAAGAAGGATGTAAAGTGTGGGAGACCAAGGACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGGCGTTGCTTACGGGGTAAACATGGCCGCCGCAGGGGAGGCTGTGACTCCAAGGTA
GCTCCACGGCGGCGGTCCCGAGCACAGCCACTGCCTCCGCTTCTCCCGTCACAGCCTCCA
TAGTCTCCAGAGCTGCACCCCATAACCCTGGCCCCCTTGCCACGTGCCGAATTCATCTAT
TACTGTGTAGACGAGGACGAGCTACCTTATACGAACCGCCGGCAGAATCGCAAGTGTGGG
GCCTGTACAGCCTGCCTGCGGCGGATGGACTGTGGCCACTGTGACTTCTGCTGTGACAAG
CCCAAATTTGGGGGCAGCAACCAGAAGCGCCAGAAATGTCGTTGGCGCCAATGCCTGCAG
TTTGCTATGAAGCGGCTGCTGCCAAGTGTCTGGGCAGGGTCTGAGGATGGGTCAGAGCCG
CCCCCACCTTACCCTCGTCGAAAAAGGCCTTGCTCTACTCGAAGGCCTCGTCTGGGTCAG
ACCCTGAAGCCTGATGACTCTGCCTCTGACTTGGCCCCAGAGGAGGAGGCAGGAGGGGCT
GGCACGCCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCCTCCGGGACACAGCA
GTCTGGTTGCCAAGGTCCAAGGACCTTAAAAAACCTGGAGCTAGAAAGCAGTAGACTGGA
GGCTTCTGCAGACTGTAGGACTCAAGGGATTGACCTTATGCAGTGGTGGGAGCATTGAAC
AGTCTCTTAAGGCTGTCGTCTTTGCATCTAATGCTGGAGCTTGAAGTCTGCAGGACAGGC
AATCGAGAAGGGAAGAAGGATGTAAAGTGTGGGAGACCAAGGACACAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               279-398, + strand, RNAz p=0.55127
               

               
               718-828, + strand, RNAz p=0.973804

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, + strand, RNAz p=0.55127
               

               
               718-828, + strand, RNAz p=0.973804

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_002384, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002384, +

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               200-434, gnl|bosTau2|chr24 (37182837-37183069)
               

               
               200-434, gnl|Hg17|chr18 (46054723-46054500)
               

               
               200-434, gnl|Mm7|chr18 (74670238-74670460)
               


               
               690-828, gnl|bosTau2|chr24 (37187304-37187445)
               

               
               690-828, gnl|canFam2|chr7 (81658686-81658353)
               

               
               690-828, gnl|dasNov1|scaffold_101553 (5925-6260)
               

               
               690-828, gnl|echTel1|scaffold_307093 (78965-79302)
               

               
               690-828, gnl|hg17|chr18 (46049894-46050227)
               

               
               690-828, gnl|Hg17|chr18 (46050266-46050125)
               

               
               690-828, gnl|loxAfr1|scaffold_42618 (4337-3998)
               

               
               690-828, gnl|mm7|chr18 (74674901-74674579)
               

               
               690-828, gnl|Mm7|chr18 (74674539-74674685)
               

               
               690-828, gnl|oryCun1|scaffold_148539 (9397-9065)
               

               
               690-828, gnl|panTro1|chr17 (42631248-42631581)
               

               
               690-828, gnl|rheMac2|chr18 (43347581-43347902)
               

               
               690-828, gnl|rn3|chr18 (71153792-71153504)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-434, gnl|bosTau2|chr24 (37182837-37183069)
               

               
               200-434, gnl|Hg17|chr18 (46054723-46054500)
               

               
               200-434, gnl|Mm7|chr18 (74670238-74670460)
               


               
               690-828, gnl|bosTau2|chr24 (37187304-37187445)
               

               
               690-828, gnl|canFam2|chr7 (81658686-81658353)
               

               
               690-828, gnl|dasNov1|scaffold_101553 (5925-6260)
               

               
               690-828, gnl|echTel1|scaffold_307093 (78965-79302)
               

               
               690-828, gnl|hg17|chr18 (46049894-46050227)
               

               
               690-828, gnl|Hg17|chr18 (46050266-46050125)
               

               
               690-828, gnl|loxAfr1|scaffold_42618 (4337-3998)
               

               
               690-828, gnl|mm7|chr18 (74674901-74674579)
               

               
               690-828, gnl|Mm7|chr18 (74674539-74674685)
               

               
               690-828, gnl|oryCun1|scaffold_148539 (9397-9065)
               

               
               690-828, gnl|panTro1|chr17 (42631248-42631581)
               

               
               690-828, gnl|rheMac2|chr18 (43347581-43347902)
               

               
               690-828, gnl|rn3|chr18 (71153792-71153504)

	279-398, + strand, RNAz p=0.55127
	718-828, + strand, RNAz p=0.973804

	200-434, gnl\|bosTau2\|chr24 (37182837-37183069)
	200-434, gnl\|Hg17\|chr18 (46054723-46054500)
	200-434, gnl\|Mm7\|chr18 (74670238-74670460)

	690-828, gnl\|bosTau2\|chr24 (37187304-37187445)
	690-828, gnl\|canFam2\|chr7 (81658686-81658353)
	690-828, gnl\|dasNov1\|scaffold_101553 (5925-6260)
	690-828, gnl\|echTel1\|scaffold_307093 (78965-79302)
	690-828, gnl\|hg17\|chr18 (46049894-46050227)
	690-828, gnl\|Hg17\|chr18 (46050266-46050125)
	690-828, gnl\|loxAfr1\|scaffold_42618 (4337-3998)
	690-828, gnl\|mm7\|chr18 (74674901-74674579)
	690-828, gnl\|Mm7\|chr18 (74674539-74674685)
	690-828, gnl\|oryCun1\|scaffold_148539 (9397-9065)
	690-828, gnl\|panTro1\|chr17 (42631248-42631581)
	690-828, gnl\|rheMac2\|chr18 (43347581-43347902)
	690-828, gnl\|rn3\|chr18 (71153792-71153504)