Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-ac-f-06-0-UNL.s1.3

Sequence:


               
               ATACCAATAACAGTGCTTGACTGTGATCTCTTGCTATATGGCCGAGGTCACCGGACATTG
GATCGCTTTAAGCTGGATGATGTGACAGATGAATACTTGATGTCCATGTATGGTTTCCCC
GACAGTTCATTTATTACTTGGTGGAGCTCTTGGGGTCAAGTCTTTCTAGACCTACTCAGA
GATCCAGAGCTATTAGCCCAGAGACACAGATCCTTGCAGCACTGGGCTTCTATACCTCAG
GTTCCTTCCAAACTCGGATGGGAGATGCTATTGGAATCAGTCAGGCATCTATGAGTCGAT
GTGTCACCAATGTCACCGAAGCGCTTGTGGAAAGAGCTTCACAGTTCATCCGCTTTCCAG
CTGATGAAGCCTCTGTGCAGGCTCTGAAGGATGAATTCTATGGGTTGGCAGGGATGCCAG
GGGTCATAGGGGTGGTCGACTGTATCCACGTGGCAATCAAGGCGCCAAATGCCGAGGACC
TTTCCTACGTGAACCGCAAAGGTCTTCATTCTTTGAACTGCCTGATGGTGTGTGACATCA
GAGGGACACTAATGACTGTGGAGACCAACTGGCCAGGAAGTCTCCAGGACTGTGTGGTGC
TGCAGCAGTCTTCTCTCAGCAGTCAGTTTGAAGCTGGTATGCACAAAGAGAGCTGGCTGC
TTGGTGACAGCTCCTTCTTTCTCCGCTCCTGGCTTATGACTCCACTTCACATTCCTGAAA
CTCCAGCCGAATATCGCTACAACATGGCCCATTCGGCGACTCACAGTGTGATCGAGAAGA
CTTTCCGAACCCTGTGCTCCCGATTCCGCTGCCTGGACGGCTCCAAGGGGGNACTGCAGT
ACTCCCCGGAGAAGTGCAGCCACATCATCTTGGCTTGCTGTGTCCTCCACAACATCTCCC
TGGAGCATGGGATGGATGTTTGGTCCTCACCAGTGACAGGACCCATGGAACANCCCCCGG
AGGAAGAGTATGAGCACATGGAGTCCTTGGACCTAGAGGCTGACCGTATCCGGCAGGAGC
TGATGCTAACTCACTTCAGCTAATGTGGAAGGTGGGGAGGCGGGAGGTTTTCCAGGAGGA
------------TNTCCCTCTCACCNCCCCCAACACAGTTCCATCATCTAGCGTGACTGA
GTGTGTGGACACCTATCACAAACTCACATTTCATCAGTGTGTTTTAGACAGTTTGGGGCT
AATTTTATTAACTACCCCCAAGCCACCAAGACAATAGTTCCCTGCTATCCACTGAACTCT
AGGTTGGCACCACTCATTTGAAAGTTCCCTGGTTGCAGACATCTATATCATGCCTAGAAA
ATCAAAGCAAAGGGGAAAACAGTATCTAGCCAGCCAGACACAATTATCTAAAGATTTTAA
ATGAAAGCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCAATAACAGTGCTTGACTGTGATCTCTTGCTATATGGCCGAGGTCACCGGACATTG
GATCGCTTTAAGCTGGATGATGTGACAGATGAATACTTGATGTCCATGTATGGTTTCCCC
GACAGTTCATTTATTACTTGGTGGAGCTCTTGGGGTCAAGTCTTTCTAGACCTACTCAGA
GATCCAGAGCTATTAGCCCAGAGACACAGATCCTTGCAGCACTGGGCTTCTATACCTCAG
GTTCCTTCCAAACTCGGATGGGAGATGCTATTGGAATCAGTCAGGCATCTATGAGTCGAT
GTGTCACCAATGTCACCGAAGCGCTTGTGGAAAGAGCTTCACAGTTCATCCGCTTTCCAG
CTGATGAAGCCTCTGTGCAGGCTCTGAAGGATGAATTCTATGGGTTGGCAGGGATGCCAG
GGGTCATAGGGGTGGTCGACTGTATCCACGTGGCAATCAAGGCGCCAAATGCCGAGGACC
TTTCCTACGTGAACCGCAAAGGTCTTCATTCTTTGAACTGCCTGATGGTGTGTGACATCA
GAGGGACACTAATGACTGTGGAGACCAACTGGCCAGGAAGTCTCCAGGACTGTGTGGTGC
TGCAGCAGTCTTCTCTCAGCAGTCAGTTTGAAGCTGGTATGCACAAAGAGAGCTGGCTGC
TTGGTGACAGCTCCTTCTTTCTCCGCTCCTGGCTTATGACTCCACTTCACATTCCTGAAA
CTCCAGCCGAATATCGCTACAACATGGCCCATTCGGCGACTCACAGTGTGATCGAGAAGA
CTTTCCGAACCCTGTGCTCCCGATTCCGCTGCCTGGACGGCTCCAAGGGGGNACTGCAGT
ACTCCCCGGAGAAGTGCAGCCACATCATCTTGGCTTGCTGTGTCCTCCACAACATCTCCC
TGGAGCATGGGATGGATGTTTGGTCCTCACCAGTGACAGGACCCATGGAACANCCCCCGG
AGGAAGAGTATGAGCACATGGAGTCCTTGGACCTAGAGGCTGACCGTATCCGGCAGGAGC
TGATGCTAACTCACTTCAGCTAATGTGGAAGGTGGGGAGGCGGGAGGTTTTCCAGGAGGA
------------TNTCCCTCTCACCNCCCCCAACACAGTTCCATCATCTAGCGTGACTGA
GTGTGTGGACACCTATCACAAACTCACATTTCATCAGTGTGTTTTAGACAGTTTGGGGCT
AATTTTATTAACTACCCCCAAGCCACCAAGACAATAGTTCCCTGCTATCCACTGAACTCT
AGGTTGGCACCACTCATTTGAAAGTTCCCTGGTTGCAGACATCTATATCATGCCTAGAAA
ATCAAAGCAAAGGGGAAAACAGTATCTAGCCAGCCAGACACAATTATCTAAAGATTTTAA
ATGAAAGCAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16552848|dbj|BAB71391.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16552848|dbj|BAB71391.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-638, + strand, RNAz p=0.730675

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-638, + strand, RNAz p=0.730675

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-665, gnl|bosTau2|chr15 (48398932-48398267)
               

               
               1-665, gnl|Hg17|chr11 (46594357-46593692)
               

               
               1-665, gnl|Mm7|chr2 (91562918-91563583)
               


               
               1189-1341, gnl|bosTau2|chr15 (48391540-48391388)
               

               
               1189-1341, gnl|Hg17|chr11 (46581475-46580755)
               

               
               1189-1341, gnl|Mm7|chr2 (91571598-91571734)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-665, gnl|bosTau2|chr15 (48398932-48398267)
               

               
               1-665, gnl|Hg17|chr11 (46594357-46593692)
               

               
               1-665, gnl|Mm7|chr2 (91562918-91563583)
               


               
               1189-1341, gnl|bosTau2|chr15 (48391540-48391388)
               

               
               1189-1341, gnl|Hg17|chr11 (46581475-46580755)
               

               
               1189-1341, gnl|Mm7|chr2 (91571598-91571734)

	1-665, gnl\|bosTau2\|chr15 (48398932-48398267)
	1-665, gnl\|Hg17\|chr11 (46594357-46593692)
	1-665, gnl\|Mm7\|chr2 (91562918-91563583)

	1189-1341, gnl\|bosTau2\|chr15 (48391540-48391388)
	1189-1341, gnl\|Hg17\|chr11 (46581475-46580755)
	1189-1341, gnl\|Mm7\|chr2 (91571598-91571734)