Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-at-f-12-0-UNL.s3.3

Sequence:


               
               GGGAGGCGGGGCTCTGTGGAGGGTCCAGGAAAGGGGAGGACGAGGAGAGCCCTTGATGTC
CCAGACTCAGATGTTGCTGTGCCCAAAGGGTAAAAGCAGTTCATGTTCTCAGAATGGAAA
AGAAACAGTGCCTTGACAGCACTTGTGTTGTTCCAGCCACTCAAGAACTGTCATTCAGAA
CAGCAAATTGAAGTCATTTCTGTGATTGTCCAGCAGGTCATTGTCACTGAGCTCACTAAA
CGCCTGATTTCAGTATAACAACAGTCATTGACTAGTGACTGGGAGGTGATGGGGCTAAAA
CATATATTTTGCCTGAAGCTATTTTCCATTGCCGGTGAAGGCCTTCTAACAGCAGTAATA
AATTCTTCTGTCTCTCAGCACAGCACAGGAGGTATAGAAAAGCAGACTGTAGGTATAGGC
ATTTTCTGAAGATTAGCAGTCCAGAGCTAACTCCCATTCAGAACTGAAAAAGGAATCCTG
GTTTGGCTAAGGAAGGAGACTGTGCAGGATGAACTCTGGGTGAGAAACTCCATGTGCGGG
AATGTGCTCACATGTAGTTGTTTTCTTGATACGTTTCTCAAACTTGTTAGATGGGCACTT
AGGTTTGGAATCAGCCTCCCTTAAAGGCTGTCCCCCCAACCCCTGCCAAAGCAAAAATCA
GCAAATCTTCCAAGGTGATGGCCAGAGAAGATCTGGGCCTGATGGCTCTTGGATTTGTGT
CTTGTTTCCATGTTCTGCTTCTGATTTCCAGTCATCCAGAGAGATGTCTTGAGAACAAAC
ATCAGACCACGAGGGACATTCTGGTTGGAAAGTCACTCGTCTTCTTGGCGGGCTCCTTCT
TCCTCTTCTTCTCGGAGTTGCTGTGATAGGGCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGCGGGGCTCTGTGGAGGGTCCAGGAAAGGGGAGGACGAGGAGAGCCCTTGATGTC
CCAGACTCAGATGTTGCTGTGCCCAAAGGGTAAAAGCAGTTCATGTTCTCAGAATGGAAA
AGAAACAGTGCCTTGACAGCACTTGTGTTGTTCCAGCCACTCAAGAACTGTCATTCAGAA
CAGCAAATTGAAGTCATTTCTGTGATTGTCCAGCAGGTCATTGTCACTGAGCTCACTAAA
CGCCTGATTTCAGTATAACAACAGTCATTGACTAGTGACTGGGAGGTGATGGGGCTAAAA
CATATATTTTGCCTGAAGCTATTTTCCATTGCCGGTGAAGGCCTTCTAACAGCAGTAATA
AATTCTTCTGTCTCTCAGCACAGCACAGGAGGTATAGAAAAGCAGACTGTAGGTATAGGC
ATTTTCTGAAGATTAGCAGTCCAGAGCTAACTCCCATTCAGAACTGAAAAAGGAATCCTG
GTTTGGCTAAGGAAGGAGACTGTGCAGGATGAACTCTGGGTGAGAAACTCCATGTGCGGG
AATGTGCTCACATGTAGTTGTTTTCTTGATACGTTTCTCAAACTTGTTAGATGGGCACTT
AGGTTTGGAATCAGCCTCCCTTAAAGGCTGTCCCCCCAACCCCTGCCAAAGCAAAAATCA
GCAAATCTTCCAAGGTGATGGCCAGAGAAGATCTGGGCCTGATGGCTCTTGGATTTGTGT
CTTGTTTCCATGTTCTGCTTCTGATTTCCAGTCATCCAGAGAGATGTCTTGAGAACAAAC
ATCAGACCACGAGGGACATTCTGGTTGGAAAGTCACTCGTCTTCTTGGCGGGCTCCTTCT
TCCTCTTCTTCTCGGAGTTGCTGTGATAGGGCAGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               606-720, - strand, RNAz p=0.734257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               606-720, - strand, RNAz p=0.734257

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_199351, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_199351, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-818, gnl|bosTau2|chr3 (3156967-3156170)
               

               
               14-818, gnl|Hg17|chr1 (163619456-163620286)
               

               
               14-818, gnl|Mm7|chr1 (166282290-166281471)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-818, gnl|bosTau2|chr3 (3156967-3156170)
               

               
               14-818, gnl|Hg17|chr1 (163619456-163620286)
               

               
               14-818, gnl|Mm7|chr1 (166282290-166281471)

	14-818, gnl\|bosTau2\|chr3 (3156967-3156170)
	14-818, gnl\|Hg17\|chr1 (163619456-163620286)
	14-818, gnl\|Mm7\|chr1 (166282290-166281471)