Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bj-f-05-0-UNL.s1.3

Sequence:


               
               CACCAAGAGGCTGAAGGACTCGGGGGTGCTGGACCAGTCAGCCAAATACTACCACCTGAC
CCACGACGAGCTCATCGGCCTGCTCCTGCAGCGGGAGCGGGAGCTGAGCCAGCGGGACGA
GCACGTGCAGGAGCTGGAGAGCTACATTGACCGGTTGCTGGTGCGGATCATGGAGACCTC
GCCCACACTGCTGCAGATCCCCCCCGGCACCCCCAAGTAGCCTGCTTCACCCTGCCCCCA
GAAGGGTTGGCGGCGGCCCACTAGCCAGTGGGGCTGGCGCCCTCCCTCTGTCCCTCCCAC
TGAACTTAGCCCACCCAGACCTGGGTGCAGCCCGGCCTCCGTGGCCACCCCTCGTTTTCT
GTCTCTCCTGCCTCGATGGGGCTACTTAGGGCTCCCACTGGCGACAGCAAGTTCTGTGTG
CATCGTGTGTCTTTGGGAACCTGGGTCTTTCTCATCTGCCTGTTTTCATACCCTTGGCTT
TGGGGGGGGTCCAAGGAATTGGAACAAAGAATTTCGCCCTCCAGATGGAGCGGGGTGAGC
TGCAATTTGATGTGGTATGTGGGACATACTTTATTACCCCTGTTTCCTCCACGGCTAAAC
CCCTGTCCTCGCCGCCTCCCTCCAGCCCTGGGAGGGCTCCTAGTATCCCTGGGCTGTGGC
AGGGACCCAGCTGCCCAGTTGTCTGTGAGTTATGGGCAACCAGGGCACCTCCTCTTCAGC
CTCCCGGCCGTTCCCCCAGGAGCAGGGGGCCTGTATGGTCTCGTCTCGTCTCTGCCATGT
CTGCTTGTTTTCAGCTGTTGTGGAGTGCGGTGTGGATGGAGGGAGGTGATGTGTGTTCTC
CAGGCCGCTCCCTGCCCTCCTCTTCTGACTTTGGCATTGAGAGTGAGTGTGTGAATGGGT
GGAGAGCTGGGCCAGGTGTGGGGAGAGCACCTCCTCACCCACCCACCTCTGGGTTTTGGG
CTGCTTGTGTTTGGGGGTCAAGCCTCCCACTCTGTTCTCATTGCCTGTCCAGAAGCCAAA
AACTCTGTGCTGCTGCAGGGTTTGAACTTTCGAAAACCAATTAAATGTGCCTTTTGTGGG
TGGGGTCAAAGCTCTGGATGTAGAGACCTCTCCCCCGGGGTCCCCTCCCTTCCATTGAGA
TTGAGCACACGGTCTGTTGGGGCGTGGGGGTGGGAAAGAGAATGGGGGAGCCCTCTGACA
CTCTGCCTCGCCGAGAATNTTGGCTTTTGGCTCGAGTCCTATAGTGAGTGGATAAATTCG
TAACATGTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAAGAGGCTGAAGGACTCGGGGGTGCTGGACCAGTCAGCCAAATACTACCACCTGAC
CCACGACGAGCTCATCGGCCTGCTCCTGCAGCGGGAGCGGGAGCTGAGCCAGCGGGACGA
GCACGTGCAGGAGCTGGAGAGCTACATTGACCGGTTGCTGGTGCGGATCATGGAGACCTC
GCCCACACTGCTGCAGATCCCCCCCGGCACCCCCAAGTAGCCTGCTTCACCCTGCCCCCA
GAAGGGTTGGCGGCGGCCCACTAGCCAGTGGGGCTGGCGCCCTCCCTCTGTCCCTCCCAC
TGAACTTAGCCCACCCAGACCTGGGTGCAGCCCGGCCTCCGTGGCCACCCCTCGTTTTCT
GTCTCTCCTGCCTCGATGGGGCTACTTAGGGCTCCCACTGGCGACAGCAAGTTCTGTGTG
CATCGTGTGTCTTTGGGAACCTGGGTCTTTCTCATCTGCCTGTTTTCATACCCTTGGCTT
TGGGGGGGGTCCAAGGAATTGGAACAAAGAATTTCGCCCTCCAGATGGAGCGGGGTGAGC
TGCAATTTGATGTGGTATGTGGGACATACTTTATTACCCCTGTTTCCTCCACGGCTAAAC
CCCTGTCCTCGCCGCCTCCCTCCAGCCCTGGGAGGGCTCCTAGTATCCCTGGGCTGTGGC
AGGGACCCAGCTGCCCAGTTGTCTGTGAGTTATGGGCAACCAGGGCACCTCCTCTTCAGC
CTCCCGGCCGTTCCCCCAGGAGCAGGGGGCCTGTATGGTCTCGTCTCGTCTCTGCCATGT
CTGCTTGTTTTCAGCTGTTGTGGAGTGCGGTGTGGATGGAGGGAGGTGATGTGTGTTCTC
CAGGCCGCTCCCTGCCCTCCTCTTCTGACTTTGGCATTGAGAGTGAGTGTGTGAATGGGT
GGAGAGCTGGGCCAGGTGTGGGGAGAGCACCTCCTCACCCACCCACCTCTGGGTTTTGGG
CTGCTTGTGTTTGGGGGTCAAGCCTCCCACTCTGTTCTCATTGCCTGTCCAGAAGCCAAA
AACTCTGTGCTGCTGCAGGGTTTGAACTTTCGAAAACCAATTAAATGTGCCTTTTGTGGG
TGGGGTCAAAGCTCTGGATGTAGAGACCTCTCCCCCGGGGTCCCCTCCCTTCCATTGAGA
TTGAGCACACGGTCTGTTGGGGCGTGGGGGTGGGAAAGAGAATGGGGGAGCCCTCTGACA
CTCTGCCTCGCCGAGAATNTTGGCTTTTGGCTCGAGTCCTATAGTGAGTGGATAAATTCG
TAACATGTAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R8N1_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R8N1_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               566-703, - strand, RNAz p=0.997383
               

               
               850-950, - strand, RNAz p=0.831237

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               566-703, - strand, RNAz p=0.997383
               

               
               850-950, - strand, RNAz p=0.831237

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-288, gnl|bosTau2|chr11 (8765289-8765018)
               

               
               15-288, gnl|Hg17|chr2 (73214509-73214245)
               

               
               15-288, gnl|Mm7|chr6 (85366678-85366408)
               


               
               389-1207, gnl|bosTau2|chr11 (8764945-8764126)
               

               
               389-1207, gnl|Hg17|chr2 (73214140-73213256)
               

               
               389-1207, gnl|Mm7|chr6 (85366322-85365499)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-288, gnl|bosTau2|chr11 (8765289-8765018)
               

               
               15-288, gnl|Hg17|chr2 (73214509-73214245)
               

               
               15-288, gnl|Mm7|chr6 (85366678-85366408)
               


               
               389-1207, gnl|bosTau2|chr11 (8764945-8764126)
               

               
               389-1207, gnl|Hg17|chr2 (73214140-73213256)
               

               
               389-1207, gnl|Mm7|chr6 (85366322-85365499)

	566-703, - strand, RNAz p=0.997383
	850-950, - strand, RNAz p=0.831237

	15-288, gnl\|bosTau2\|chr11 (8765289-8765018)
	15-288, gnl\|Hg17\|chr2 (73214509-73214245)
	15-288, gnl\|Mm7\|chr6 (85366678-85366408)

	389-1207, gnl\|bosTau2\|chr11 (8764945-8764126)
	389-1207, gnl\|Hg17\|chr2 (73214140-73213256)
	389-1207, gnl\|Mm7\|chr6 (85366322-85365499)