Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-bq-g-06-0-UNL.s1.3

Sequence:


               
               GCGGCCGCTCTTCTGCAGATACTTCACTTCAAAACAACTTCATAAAATCAGGGTCTACAC
CACCCTTAGTGAGTCCACCTCTACCTACTACTTTTCAACCAGGAGCTCCTCTTGGACCCC
CTCCAACTGGAGGACCACCTCCAGTCAGGGCCCTTCCTCCTCAGAAATCAACACTTAGAG
CTGTGCCTCAGCCCTCATTTAATTCAGCTAGCAAGCAAGAAGGTATTACATCAAATACCA
ATAATGGATCTATGGTGGTTCACAATAGTTACGATGAAATTGAAGGCGGTGGCTTTTTGG
CAACCCCACAGCCTACTAATAAGAATCCCACAGTGAGCCGAAGTGTTGGATATTCATATC
CCTCCTTACCACCTGGCTATCAGCACACCACACCACCTAGTATGGCAGGAATGCCACCCT
CCTCCTTCAGTTACCCAAGTGGCCCACAGGCTTTTACTCAGACTCCCTTAGGTGCTAATC
ATTTAACTGCAAGCATGAGTGGATTAAGTCTTCATCCAGAGGGGCTAAGAGTTGTCAATC
TTCTTCAAGAAAGAAACATGCTTCCATCAACACCTTTGCAGCCTCCGGTTCCAAATTTGC
ATGAAGATATCCAGAAACTCAACTGTAACCCAGAGTTATTTCGATGCACACTAACTGGCA
TTCCTCAGACTCAGGCCTTACTGAATAAAGCCAACTTCCTTTGGGACTGCTGCTTCATCC
TTTCAAAGACCTAGTGCAATTGCCTGTGGTTACTCTAGTACAATTGTGGAGATGCCGTTC
ATGCAGGACATACATCAACCCTTTTGTCAGCTTTCTTGATCAAAGGAGATGGAAATGCAA
CTTATGTTACCGAGTCAATGATGTTCCTGAAGAATTCATGTACAACCCTTTGACCAGAGT
CTATGGAGAACCTCACAGAAGACCTGAAGTTCAGAATGCTACTATTGAGTTTATGGCTCC
TTCAGAATACATGTTACGGCCACCTCAGCCTCCAGTGTACCTCTTTGTATTTGACGTGTC
TCACAATGCAGTTGAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCT
GGATTTGTAAGTATCTTAATACAGGTTAAATTAGAAGCTAAGTTTTTGTAAAATGAACAA
GCAGTTTCAAAATAGACTTTTAAAAAAAACATGCAATTAAGTTCTAAAAGATCACTTAAA
TCACTGGTTAACTTTATACCTCACTGTCTCTGAGAAGTATTATTTTAACTTTTTGTTATG
GAAAAATTTCAAACATAGTAAACAGAAAGAGTGCAATGAATTTCCAGGTACCCATCCCTC
AACTTCAGTATTTTTAGCATTCAGCTATTCTTGCTTCATCTGATCTTGCCTCTACTTCCC
ACTTTTTCCACTAGAGTATTTTAGTGTAAATCTCAATTAGCACGTCATTTTACCTAAAAA
TACTTGGAATTTGTTTTAGGCCTAAAATGAGTATCACATCAAACAAAATTAGGAATAATT
CCATACTGTGATCTAATACCAGTTCAGCTGTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTCTTCTGCAGATACTTCACTTCAAAACAACTTCATAAAATCAGGGTCTACAC
CACCCTTAGTGAGTCCACCTCTACCTACTACTTTTCAACCAGGAGCTCCTCTTGGACCCC
CTCCAACTGGAGGACCACCTCCAGTCAGGGCCCTTCCTCCTCAGAAATCAACACTTAGAG
CTGTGCCTCAGCCCTCATTTAATTCAGCTAGCAAGCAAGAAGGTATTACATCAAATACCA
ATAATGGATCTATGGTGGTTCACAATAGTTACGATGAAATTGAAGGCGGTGGCTTTTTGG
CAACCCCACAGCCTACTAATAAGAATCCCACAGTGAGCCGAAGTGTTGGATATTCATATC
CCTCCTTACCACCTGGCTATCAGCACACCACACCACCTAGTATGGCAGGAATGCCACCCT
CCTCCTTCAGTTACCCAAGTGGCCCACAGGCTTTTACTCAGACTCCCTTAGGTGCTAATC
ATTTAACTGCAAGCATGAGTGGATTAAGTCTTCATCCAGAGGGGCTAAGAGTTGTCAATC
TTCTTCAAGAAAGAAACATGCTTCCATCAACACCTTTGCAGCCTCCGGTTCCAAATTTGC
ATGAAGATATCCAGAAACTCAACTGTAACCCAGAGTTATTTCGATGCACACTAACTGGCA
TTCCTCAGACTCAGGCCTTACTGAATAAAGCCAACTTCCTTTGGGACTGCTGCTTCATCC
TTTCAAAGACCTAGTGCAATTGCCTGTGGTTACTCTAGTACAATTGTGGAGATGCCGTTC
ATGCAGGACATACATCAACCCTTTTGTCAGCTTTCTTGATCAAAGGAGATGGAAATGCAA
CTTATGTTACCGAGTCAATGATGTTCCTGAAGAATTCATGTACAACCCTTTGACCAGAGT
CTATGGAGAACCTCACAGAAGACCTGAAGTTCAGAATGCTACTATTGAGTTTATGGCTCC
TTCAGAATACATGTTACGGCCACCTCAGCCTCCAGTGTACCTCTTTGTATTTGACGTGTC
TCACAATGCAGTTGAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCT
GGATTTGTAAGTATCTTAATACAGGTTAAATTAGAAGCTAAGTTTTTGTAAAATGAACAA
GCAGTTTCAAAATAGACTTTTAAAAAAAACATGCAATTAAGTTCTAAAAGATCACTTAAA
TCACTGGTTAACTTTATACCTCACTGTCTCTGAGAAGTATTATTTTAACTTTTTGTTATG
GAAAAATTTCAAACATAGTAAACAGAAAGAGTGCAATGAATTTCCAGGTACCCATCCCTC
AACTTCAGTATTTTTAGCATTCAGCTATTCTTGCTTCATCTGATCTTGCCTCTACTTCCC
ACTTTTTCCACTAGAGTATTTTAGTGTAAATCTCAATTAGCACGTCATTTTACCTAAAAA
TACTTGGAATTTGTTTTAGGCCTAAAATGAGTATCACATCAAACAAAATTAGGAATAATT
CCATACTGTGATCTAATACCAGTTCAGCTGTTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17939580|gb|AAH19341.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17939580|gb|AAH19341.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1012-1129, + strand, RNAz p=0.659743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1012-1129, + strand, RNAz p=0.659743

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-863, gnl|bosTau2|chr4 (3294628-3293753)
               

               
               9-863, gnl|Hg17|chr5 (134025133-134043317)
               

               
               9-863, gnl|Mm7|chr11 (51700335-51686209)
               


               
               973-1514, gnl|bosTau2|chr7 (32440239-32439691)
               

               
               973-1514, gnl|Hg17|chr5 (134050378-134050850)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-863, gnl|bosTau2|chr4 (3294628-3293753)
               

               
               9-863, gnl|Hg17|chr5 (134025133-134043317)
               

               
               9-863, gnl|Mm7|chr11 (51700335-51686209)
               


               
               973-1514, gnl|bosTau2|chr7 (32440239-32439691)
               

               
               973-1514, gnl|Hg17|chr5 (134050378-134050850)

	9-863, gnl\|bosTau2\|chr4 (3294628-3293753)
	9-863, gnl\|Hg17\|chr5 (134025133-134043317)
	9-863, gnl\|Mm7\|chr11 (51700335-51686209)

	973-1514, gnl\|bosTau2\|chr7 (32440239-32439691)
	973-1514, gnl\|Hg17\|chr5 (134050378-134050850)