Non-Coding RNA Search

Ss1.1-uFN-UNL-P-FN-dd-c-08-0-UNL.s1.3

Sequence:


               
               GTCCTCGTCGTCATCCTCGTCGTCCTCCTCCTCCGGCTCCAGTTTTAGTGACTCGGAGGG
CTCTAGCCTTCCCACTCAACNTGAGGTAGCGCTGAAGAGGTGAGGGGCTGTGGGAACTGC
ACGGGCAGGTTTTGGGGGTGGCTGGTGGGGTCGGGAGGGAGAAGCCCTGTGCAGAGGTTC
TTGGCTCCTTGAGGAGGTATGGGGACCCTGACCCTTGAGCTCGGGGTAGAAGAGAATGCG
GGGCGGGGGCGATGGTGGGAGGGGCGGGACAGGTGAAAGTCTCCGAAGCTCACTTCTCTA
GAGGATAATGATGAGTTTTCCGTCTCTACAGAGGACAGAACTAGAGGAAATGGACTTAAT
TTTACAGCAGGAGGGATGGCAGTTAGACCTCAAGAGGAACTCCCTGGGCTGGAAGGATCT
TCAGAGGTCATCCTATCCCTCTCCCTGCCTCCAGGCAGGCCGGCCCCCCCCCAGCCAACC
CGCAAACACACAGGCCTCCCCGAGCTGCAAGCTGCGGGCTGCGGCTCTCCTCTCCGAGGA
CGACCACCCGGCTCGGCCTCCACACCTGAGCCCAGGGGCCTAATCCTCCATCAGGGACAT
TCTTGAGGTTTAACCTTGATCCCTTTTGCTGCGGGCCCCAGCCTGTTGCTCGCGTTAGGA
TGGTCACCGGCTCAGGCTTGCAGAGCTCCCGGGGCCGCTCGCAGGCACCCCTCCCCACTG
CCGTTTCNTCCAGGCCAAAGGAAGGTAGGGTTGGGGCTGGGGCAGCCTGTCTCCTTGTGA
CANCCTCTTCTCCCACACGGTNCCCAGNCCCGCCCCAGCCCCGAAGAGGGTGTTCGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTCGTCGTCATCCTCGTCGTCCTCCTCCTCCGGCTCCAGTTTTAGTGACTCGGAGGG
CTCTAGCCTTCCCACTCAACNTGAGGTAGCGCTGAAGAGGTGAGGGGCTGTGGGAACTGC
ACGGGCAGGTTTTGGGGGTGGCTGGTGGGGTCGGGAGGGAGAAGCCCTGTGCAGAGGTTC
TTGGCTCCTTGAGGAGGTATGGGGACCCTGACCCTTGAGCTCGGGGTAGAAGAGAATGCG
GGGCGGGGGCGATGGTGGGAGGGGCGGGACAGGTGAAAGTCTCCGAAGCTCACTTCTCTA
GAGGATAATGATGAGTTTTCCGTCTCTACAGAGGACAGAACTAGAGGAAATGGACTTAAT
TTTACAGCAGGAGGGATGGCAGTTAGACCTCAAGAGGAACTCCCTGGGCTGGAAGGATCT
TCAGAGGTCATCCTATCCCTCTCCCTGCCTCCAGGCAGGCCGGCCCCCCCCCAGCCAACC
CGCAAACACACAGGCCTCCCCGAGCTGCAAGCTGCGGGCTGCGGCTCTCCTCTCCGAGGA
CGACCACCCGGCTCGGCCTCCACACCTGAGCCCAGGGGCCTAATCCTCCATCAGGGACAT
TCTTGAGGTTTAACCTTGATCCCTTTTGCTGCGGGCCCCAGCCTGTTGCTCGCGTTAGGA
TGGTCACCGGCTCAGGCTTGCAGAGCTCCCGGGGCCGCTCGCAGGCACCCCTCCCCACTG
CCGTTTCNTCCAGGCCAAAGGAAGGTAGGGTTGGGGCTGGGGCAGCCTGTCTCCTTGTGA
CANCCTCTTCTCCCACACGGTNCCCAGNCCCGCCCCAGCCCCGAAGAGGGTGTTCGAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               347-658, - strand, RNAz p=0.982267
               

               
               682-840, - strand, RNAz p=0.925392

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-658, - strand, RNAz p=0.982267
               

               
               682-840, - strand, RNAz p=0.925392

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               737-833, + strand, RNAmicro p=0.997457
               

               
               379-461, + strand, RNAmicro p=0.991816
               

               
               368-461, - strand, RNAmicro p=0.974467
               

               
               756-834, - strand, RNAmicro p=0.973592

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               737-833, + strand, RNAmicro p=0.997457
               

               
               379-461, + strand, RNAmicro p=0.991816
               

               
               368-461, - strand, RNAmicro p=0.974467
               

               
               756-834, - strand, RNAmicro p=0.973592

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               347-459, LB0167.CR_M15 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT817613.1|), 
blast E-value=0, identity=100% 
               

               
               347-459, 1472472 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT891342.1|), 
blast E-value=0, identity=100% 
               

               
               347-650, LB01713.CR_L14 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814535.1|), 
blast E-value=8.40779e-45, identity=93.43% 
               

               
               347-650, LB02913.CR_F13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV918553.1|), 
blast E-value=0, identity=94.16% 
               

               
               347-650, LB03022.CR_K08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931408.1|), 
blast E-value=8.40779e-45, identity=93.43% 
               

               
               347-459, LB02979.CR_P15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE361904.1|), 
blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               347-459, LB0167.CR_M15 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT817613.1|), 
blast E-value=0, identity=100% 
               

               
               347-459, 1472472 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT891342.1|), 
blast E-value=0, identity=100% 
               

               
               347-650, LB01713.CR_L14 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814535.1|), 
blast E-value=8.40779e-45, identity=93.43% 
               

               
               347-650, LB02913.CR_F13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV918553.1|), 
blast E-value=0, identity=94.16% 
               

               
               347-650, LB03022.CR_K08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931408.1|), 
blast E-value=8.40779e-45, identity=93.43% 
               

               
               347-459, LB02979.CR_P15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE361904.1|), 
blast E-value=0, identity=100%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-658, gnl|bosTau2|chr25 (23258-23914)
               

               
               2-658, gnl|Hg17|chr16 (2758169-2758820)
               

               
               2-658, gnl|Mm7|chr17 (22001468-22002108)
               


               
               682-840, gnl|bosTau2|chr25 (23989-24146)
               

               
               682-840, gnl|Hg17|chr16 (2758881-2759041)
               

               
               682-840, gnl|Mm7|chr17 (22002171-22002330)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-658, gnl|bosTau2|chr25 (23258-23914)
               

               
               2-658, gnl|Hg17|chr16 (2758169-2758820)
               

               
               2-658, gnl|Mm7|chr17 (22001468-22002108)
               


               
               682-840, gnl|bosTau2|chr25 (23989-24146)
               

               
               682-840, gnl|Hg17|chr16 (2758881-2759041)
               

               
               682-840, gnl|Mm7|chr17 (22002171-22002330)

	347-658, - strand, RNAz p=0.982267
	682-840, - strand, RNAz p=0.925392

	737-833, + strand, RNAmicro p=0.997457
	379-461, + strand, RNAmicro p=0.991816
	368-461, - strand, RNAmicro p=0.974467
	756-834, - strand, RNAmicro p=0.973592

	347-459, LB0167.CR_M15 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT817613.1\|), blast E-value=0, identity=100%
	347-459, 1472472 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT891342.1\|), blast E-value=0, identity=100%
	347-650, LB01713.CR_L14 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV814535.1\|), blast E-value=8.40779e-45, identity=93.43%
	347-650, LB02913.CR_F13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV918553.1\|), blast E-value=0, identity=94.16%
	347-650, LB03022.CR_K08 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV931408.1\|), blast E-value=8.40779e-45, identity=93.43%
	347-459, LB02979.CR_P15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE361904.1\|), blast E-value=0, identity=100%

	2-658, gnl\|bosTau2\|chr25 (23258-23914)
	2-658, gnl\|Hg17\|chr16 (2758169-2758820)
	2-658, gnl\|Mm7\|chr17 (22001468-22002108)

	682-840, gnl\|bosTau2\|chr25 (23989-24146)
	682-840, gnl\|Hg17\|chr16 (2758881-2759041)
	682-840, gnl\|Mm7\|chr17 (22002171-22002330)