Ss1.1-unkn-10-3_1G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGGCGCTGTCTCTTCACATTGCTTGGACATTTAGACTACATTCGCACTACATTTTTTC ATCATGAATATCCTTGGATCTTGAGTGCCTCAGATGATCAGACCATCCGAGTGTGGAACT GGCAGTCTAGAACCTGTGTCTGTGTGTTAACGGGGCACAACCATTATGTAATGTGTGCTC AGTTTCACCCCT------------TTGTGTCAGCTAGCCTGGACCAGACTGTGCGCGTTT GGGATATTTCTGGTCTAANAAAAAAAAACTTGTCCCCTGGTGCAGTGGAGTCGGATGTGA GAGGAATAACTGGGGTTGATCTGTTTGGAACTACGGATGCAGTGGTGAAACATGTCCTGG AGGGTCATGATCGTGGAGTTAACTGCTGCCTTCCACCCTACTATGCCCCTTATTGTATCT GGGGCAGATGACCGTCAAGTGAAGATCTGGCGCATGTCAGAATCAAAGGCATGGGAGGTT GATACCTGCCGGGGCCATTACAACAACGTATCTTGTGCTGTCTTCCACCCTCGCCAAGAG TTGATCCTTAGCAATTCTGAGGACAAGAGTATCCGAGTCTGGGATATGTCTAAGCGGTAA GGGGTTGCAACGGCGTGTGACTAAACCAGGGGAAAGCCCCTTTCTTTCTCTCTCTTTTAA AGAATTAGATTAAAATACTTCTTCTGGAGTTCCCTTTGTGGCACAGTG------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------CTACAGGCCATGAGTACAGCCGTAAAAAAAATAAAA ATAAAAATAAAAATAAGACACTTTCCACCAAAGTGTCTTAGGAGCGCTGGAACTCAGGTT CAATCCCTGGTCCAGCACTAGATTAGGTTGAAAAGCAGCTCGGATCTGATTCCTGGCCCA TTACTCCATATGCCACAGGGCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGGCGCTGTCTCTTCACATTGCTTGGACATTTAGACTACATTCGCACTACATTTTTTC ATCATGAATATCCTTGGATCTTGAGTGCCTCAGATGATCAGACCATCCGAGTGTGGAACT GGCAGTCTAGAACCTGTGTCTGTGTGTTAACGGGGCACAACCATTATGTAATGTGTGCTC AGTTTCACCCCT------------TTGTGTCAGCTAGCCTGGACCAGACTGTGCGCGTTT GGGATATTTCTGGTCTAANAAAAAAAAACTTGTCCCCTGGTGCAGTGGAGTCGGATGTGA GAGGAATAACTGGGGTTGATCTGTTTGGAACTACGGATGCAGTGGTGAAACATGTCCTGG AGGGTCATGATCGTGGAGTTAACTGCTGCCTTCCACCCTACTATGCCCCTTATTGTATCT GGGGCAGATGACCGTCAAGTGAAGATCTGGCGCATGTCAGAATCAAAGGCATGGGAGGTT GATACCTGCCGGGGCCATTACAACAACGTATCTTGTGCTGTCTTCCACCCTCGCCAAGAG TTGATCCTTAGCAATTCTGAGGACAAGAGTATCCGAGTCTGGGATATGTCTAAGCGGTAA GGGGTTGCAACGGCGTGTGACTAAACCAGGGGAAAGCCCCTTTCTTTCTCTCTCTTTTAA AGAATTAGATTAAAATACTTCTTCTGGAGTTCCCTTTGTGGCACAGTG------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------CTACAGGCCATGAGTACAGCCGTAAAAAAAATAAAA ATAAAAATAAAAATAAGACACTTTCCACCAAAGTGTCTTAGGAGCGCTGGAACTCAGGTT CAATCCCTGGTCCAGCACTAGATTAGGTTGAAAAGCAGCTCGGATCTGATTCCTGGCCCA TTACTCCATATGCCACAGGGCAGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 445-564, - strand, RNAz p=0.651695 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 445-564, - strand, RNAz p=0.651695 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 240-351, gnl|bosTau2|chr3 (4731320-4731431) | |
| 240-351, gnl|canFam2|chr38 (24908288-24908143) | |
| 240-351, gnl|danRer3|chr2 (35215781-35215908) | |
| 240-351, gnl|dasNov1|scaffold_499 (128715-128860) | |
| 240-351, gnl|echTel1|scaffold_319549 (190720-190865) | |
| 240-351, gnl|fr1|chrUn (251374779-251374627) | |
| 240-351, gnl|galGal2|chrUn (8037499-8037368) | |
| 240-351, gnl|hg17|chr1 (157108385-157108530) | |
| 240-351, gnl|Hg17|chr1 (157108516-157108405) | |
| 240-351, gnl|loxAfr1|scaffold_60577 (11551-11694) | |
| 240-351, gnl|mm7|chr1 (172067982-172067834) | |
| 240-351, gnl|Mm7|chr1 (172067846-172067957) | |
| 240-351, gnl|monDom2|scaffold_13 (61165932-61165789) | |
| 240-351, gnl|oryCun1|scaffold_148972 (4060-3915) | |
| 240-351, gnl|panTro1|chr1 (139188506-139188651) | |
| 240-351, gnl|rheMac2|chr1 (138943814-138943959) | |
| 240-351, gnl|rn3|chr13 (88282080-88281936) | |
| 240-351, gnl|tetNig1|chrUn_random (147373842-147373728) | |
| 240-351, gnl|xenTro1|scaffold_96 (2001079-2001225) | |
| 445-671, gnl|bosTau2|chr3 (4733943-4734179) | |
| 445-671, gnl|Hg17|chr1 (157096992-157096776) | |
| 445-671, gnl|Mm7|chr1 (172071548-172071751) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 240-351, gnl|bosTau2|chr3 (4731320-4731431) | |
| 240-351, gnl|canFam2|chr38 (24908288-24908143) | |
| 240-351, gnl|danRer3|chr2 (35215781-35215908) | |
| 240-351, gnl|dasNov1|scaffold_499 (128715-128860) | |
| 240-351, gnl|echTel1|scaffold_319549 (190720-190865) | |
| 240-351, gnl|fr1|chrUn (251374779-251374627) | |
| 240-351, gnl|galGal2|chrUn (8037499-8037368) | |
| 240-351, gnl|hg17|chr1 (157108385-157108530) | |
| 240-351, gnl|Hg17|chr1 (157108516-157108405) | |
| 240-351, gnl|loxAfr1|scaffold_60577 (11551-11694) | |
| 240-351, gnl|mm7|chr1 (172067982-172067834) | |
| 240-351, gnl|Mm7|chr1 (172067846-172067957) | |
| 240-351, gnl|monDom2|scaffold_13 (61165932-61165789) | |
| 240-351, gnl|oryCun1|scaffold_148972 (4060-3915) | |
| 240-351, gnl|panTro1|chr1 (139188506-139188651) | |
| 240-351, gnl|rheMac2|chr1 (138943814-138943959) | |
| 240-351, gnl|rn3|chr13 (88282080-88281936) | |
| 240-351, gnl|tetNig1|chrUn_random (147373842-147373728) | |
| 240-351, gnl|xenTro1|scaffold_96 (2001079-2001225) | |
| 445-671, gnl|bosTau2|chr3 (4733943-4734179) | |
| 445-671, gnl|Hg17|chr1 (157096992-157096776) | |
| 445-671, gnl|Mm7|chr1 (172071548-172071751) |