Non-Coding RNA Search

Ss1.1-unkn-AR027C09LN30JC09S.5

Sequence:


               
               GGGGCATGCCCTGCACAATGACTTCCAGGCTCTCAAGTACGTCCACCCTCGGGGCCAGAC
CCGGGATACCACTTACGTCCCCAACCTCCTCAGCCAGCCTGGCCTCCACACCCGGACCCG
GGTCTCTCTTAAGGACCTGGCCCTGCAGCTGCTGCACAAGAAAATCCAGGTGGGCCAGCA
CGGGCACTCATCCGTGGAAGATGCTGTGACGGCCATGGAGCTCTACCGGCTGGTGGAAGT
ACAGTGGGAACAGCAGGAGGCCAGCAGCCCCCGGAGCCACCCTGAGGACAGAGAACCTGA
CAGCAGCACGGACATGGAGCAGTATATGGAGGACCAGTACTGGCCTGAAGACCTGGCCCC
AGGCACCAGCAGCGGATCAGGGGAGGCGCAGGGCAGAAGGGAGTGAGGGAGAAGAGGCTC
CCGTGGGGAGGAGGCCCAGGGGAACACTAGAGGCTTCAGCCAGCAGTGCCCAGGGTCTGA
GGAGCTGGGACGACCTGTCCTCTTGAGCTCTGCCTTCAGAGGCACAGCCTTTTCCCCCTG
ACTTCTGTGGTTTTGCTAATGGCACTTGATTGACACCAAGTAAATCTCAGGTGGGCGGGC
TGCTAGAGTCCAGCAGGTGTAGAGAATATGCCAGCAGATAGCACCAGGCTGCCACTGGCC
TTCCCCACCCCATGCTGCGCTCTCCCTCTCTGGGGGTGGTGGATGGGGTGTCAGTAGCCA
GGAGTTCACTTGTCTCAACTCTGACCTGGGGTAAAGCTCTCTTCCCATCTTCCCATCTAC
CTCTGCCTCCAGAGTCACTTTCAGGTTCAGAGTAAATACACCCTGAATCTGTAGAGTTGA
GGCCACTCAAGGGACATTTCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCATGCCCTGCACAATGACTTCCAGGCTCTCAAGTACGTCCACCCTCGGGGCCAGAC
CCGGGATACCACTTACGTCCCCAACCTCCTCAGCCAGCCTGGCCTCCACACCCGGACCCG
GGTCTCTCTTAAGGACCTGGCCCTGCAGCTGCTGCACAAGAAAATCCAGGTGGGCCAGCA
CGGGCACTCATCCGTGGAAGATGCTGTGACGGCCATGGAGCTCTACCGGCTGGTGGAAGT
ACAGTGGGAACAGCAGGAGGCCAGCAGCCCCCGGAGCCACCCTGAGGACAGAGAACCTGA
CAGCAGCACGGACATGGAGCAGTATATGGAGGACCAGTACTGGCCTGAAGACCTGGCCCC
AGGCACCAGCAGCGGATCAGGGGAGGCGCAGGGCAGAAGGGAGTGAGGGAGAAGAGGCTC
CCGTGGGGAGGAGGCCCAGGGGAACACTAGAGGCTTCAGCCAGCAGTGCCCAGGGTCTGA
GGAGCTGGGACGACCTGTCCTCTTGAGCTCTGCCTTCAGAGGCACAGCCTTTTCCCCCTG
ACTTCTGTGGTTTTGCTAATGGCACTTGATTGACACCAAGTAAATCTCAGGTGGGCGGGC
TGCTAGAGTCCAGCAGGTGTAGAGAATATGCCAGCAGATAGCACCAGGCTGCCACTGGCC
TTCCCCACCCCATGCTGCGCTCTCCCTCTCTGGGGGTGGTGGATGGGGTGTCAGTAGCCA
GGAGTTCACTTGTCTCAACTCTGACCTGGGGTAAAGCTCTCTTCCCATCTTCCCATCTAC
CTCTGCCTCCAGAGTCACTTTCAGGTTCAGAGTAAATACACCCTGAATCTGTAGAGTTGA
GGCCACTCAAGGGACATTTCCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WYW8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WYW8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               499-670, - strand, RNAz p=0.988035
               

               
               689-839, - strand, RNAz p=0.978143

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-670, - strand, RNAz p=0.988035
               

               
               689-839, - strand, RNAz p=0.978143

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               167-859, gnl|bosTau2|chr21 (14680169-14680869)
               

               
               167-859, gnl|Hg17|chr15 (86974290-86975093)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-859, gnl|bosTau2|chr21 (14680169-14680869)
               

               
               167-859, gnl|Hg17|chr15 (86974290-86975093)

	499-670, - strand, RNAz p=0.988035
	689-839, - strand, RNAz p=0.978143

	167-859, gnl\|bosTau2\|chr21 (14680169-14680869)
	167-859, gnl\|Hg17\|chr15 (86974290-86975093)