Non-Coding RNA Search

Ss1.1-unkn-AR079H02BMAH02S.5

Sequence:


               
               GTTTATTTGCTCTAGCATGGTATTTCTGAAGTATAAACCCAGTCTTAAGGTTTTCTACAT
AGCGAACTTGTGAGATCCCGTTCTGTCCTCTTATGTCCCCTGTCTTCCCCCCTCACCCCA
CCACCCTTTTTTTTCCTCATTTAAGAATCTTGGAGAGGTATCTCCATTAACCTCCAGGAG
GAGGAGAGAGAGAGGAGAGACAACTACGTGCCCGAGGTCTCAGCCCTGGATCAGGAGATC
ATTGAAGTAGATCCTGACACTAAGGAGATGCTGAAACTCTTGGACTTTGGCAGTCTGTCC
AACCTGCAAGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACACCACGTGGAGCCGTT
TGAGTCTTTCTGCTATGCTGTAATATTTTGAATAAACCTCAGTCAACCCCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATTTGCTCTAGCATGGTATTTCTGAAGTATAAACCCAGTCTTAAGGTTTTCTACAT
AGCGAACTTGTGAGATCCCGTTCTGTCCTCTTATGTCCCCTGTCTTCCCCCCTCACCCCA
CCACCCTTTTTTTTCCTCATTTAAGAATCTTGGAGAGGTATCTCCATTAACCTCCAGGAG
GAGGAGAGAGAGAGGAGAGACAACTACGTGCCCGAGGTCTCAGCCCTGGATCAGGAGATC
ATTGAAGTAGATCCTGACACTAAGGAGATGCTGAAACTCTTGGACTTTGGCAGTCTGTCC
AACCTGCAAGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACACCACGTGGAGCCGTT
TGAGTCTTTCTGCTATGCTGTAATATTTTGAATAAACCTCAGTCAACCCCAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47213229|emb|CAF89750.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47213229|emb|CAF89750.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-305, + strand, RNAz p=0.668276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-305, + strand, RNAz p=0.668276

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               153-420, gnl|bosTau2|chr18 (38868428-38868682)
               

               
               153-420, gnl|Hg17|chr22 (30760227-30760496)
               

               
               153-420, gnl|Mm7|chr17 (28587090-28586828)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-420, gnl|bosTau2|chr18 (38868428-38868682)
               

               
               153-420, gnl|Hg17|chr22 (30760227-30760496)
               

               
               153-420, gnl|Mm7|chr17 (28587090-28586828)

	153-420, gnl\|bosTau2\|chr18 (38868428-38868682)
	153-420, gnl\|Hg17\|chr22 (30760227-30760496)
	153-420, gnl\|Mm7\|chr17 (28587090-28586828)