Non-Coding RNA Search

Ss1.1-unkn-ESTPBBD10.5

Sequence:


               
               AAAAAAAGAAATTAGAAGATGAGGCTACCAGGAAAGCAAAACAAGGAAAAGAAAACTTAT
GGAAAGAAAATCTTAGAAAGGAGGAAGAAGAAAAACAAAAGCGTCTCCAAGAAGAAAAAA
CACAAGAAAAAGTTAAAGAAGAGGAACGAAAAGCTGAGGAAAAACAATGTGAGCCAGCTG
GTGCTCTGGTGAATTATAAGGCATTGTATCGATTTGAAGCAAGGAGCCATGATGAAATGA
GTTTTAACTCTGGGGATATAATACAGGTTGATGAAAAAACCACAGGAGAACCTGGTTGGC
TTTATGGTAGTTTTCAAGGAAATTTTGGCTGGTTTCCATGCAACTATGTAGAAAAAATGA
CATCAAATGAAAAATCTGTGTCTCCCAAGAAGGCCTTACTTCCTCCTACAGTACCTTTAT
CTACTACCTCAACTTCTGAATCACTTTCTTCAAATCAACCAGCATCAGTGACCGATTATC
AAAATGTATCTTTGTCAAACCTAACTGTTAACACATCATGGCAGAAAAAATCCGCTTTTA
CTCGCACTGTGTCCCCTGTATCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGAAATTAGAAGATGAGGCTACCAGGAAAGCAAAACAAGGAAAAGAAAACTTAT
GGAAAGAAAATCTTAGAAAGGAGGAAGAAGAAAAACAAAAGCGTCTCCAAGAAGAAAAAA
CACAAGAAAAAGTTAAAGAAGAGGAACGAAAAGCTGAGGAAAAACAATGTGAGCCAGCTG
GTGCTCTGGTGAATTATAAGGCATTGTATCGATTTGAAGCAAGGAGCCATGATGAAATGA
GTTTTAACTCTGGGGATATAATACAGGTTGATGAAAAAACCACAGGAGAACCTGGTTGGC
TTTATGGTAGTTTTCAAGGAAATTTTGGCTGGTTTCCATGCAACTATGTAGAAAAAATGA
CATCAAATGAAAAATCTGTGTCTCCCAAGAAGGCCTTACTTCCTCCTACAGTACCTTTAT
CTACTACCTCAACTTCTGAATCACTTTCTTCAAATCAACCAGCATCAGTGACCGATTATC
AAAATGTATCTTTGTCAAACCTAACTGTTAACACATCATGGCAGAAAAAATCCGCTTTTA
CTCGCACTGTGTCCCCTGTATCGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               265-377, + strand, RNAz p=0.604866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-377, + strand, RNAz p=0.604866

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               30-173, gnl|bosTau2|chr11 (56213103-56213246)
               

               
               30-173, gnl|Hg17|chr2 (24406463-24406320)
               

               
               30-173, gnl|Mm7|chr12 (4584667-4584810)
               


               
               265-447, gnl|bosTau2|chr11 (56218032-56218208)
               

               
               265-447, gnl|Hg17|chr2 (24396264-24396073)
               

               
               265-447, gnl|Mm7|chr12 (4590331-4590516)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-173, gnl|bosTau2|chr11 (56213103-56213246)
               

               
               30-173, gnl|Hg17|chr2 (24406463-24406320)
               

               
               30-173, gnl|Mm7|chr12 (4584667-4584810)
               


               
               265-447, gnl|bosTau2|chr11 (56218032-56218208)
               

               
               265-447, gnl|Hg17|chr2 (24396264-24396073)
               

               
               265-447, gnl|Mm7|chr12 (4590331-4590516)

	30-173, gnl\|bosTau2\|chr11 (56213103-56213246)
	30-173, gnl\|Hg17\|chr2 (24406463-24406320)
	30-173, gnl\|Mm7\|chr12 (4584667-4584810)

	265-447, gnl\|bosTau2\|chr11 (56218032-56218208)
	265-447, gnl\|Hg17\|chr2 (24396264-24396073)
	265-447, gnl\|Mm7\|chr12 (4590331-4590516)