Non-Coding RNA Search

Ss1.1-unkn-F_2_B03.5

Sequence:


               
               GAGCGGCCGCCCGGGCAGGTACCTCATCTACTCCCAGGTCCTCTTCAGGGGCCAAGGCTG
CCCTTCCACCAACGTTTTCCTCACTCACACCATCAGCCGCATCGCCGTCTCCTACCAGAC
CAAGGTCAACCTCCTCTCTGCCATCAAGAGCCCTTGCCAGAGGGAGACCCCCGAGGGGGC
CGAGGCCAAGCCCTGGTACCTGCCCGGGCGGCCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCCGCCCGGGCAGGTACCTCATCTACTCCCAGGTCCTCTTCAGGGGCCAAGGCTG
CCCTTCCACCAACGTTTTCCTCACTCACACCATCAGCCGCATCGCCGTCTCCTACCAGAC
CAAGGTCAACCTCCTCTCTGCCATCAAGAGCCCTTGCCAGAGGGAGACCCCCGAGGGGGC
CGAGGCCAAGCCCTGGTACCTGCCCGGGCGGCCGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29170412|emb|CAD80053.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29170412|emb|CAD80053.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-198, - strand, RNAz p=0.583106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-198, - strand, RNAz p=0.583106

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               20-198, gnl|bosTau2|chr23 (23243237-23243415)
               

               
               20-198, gnl|canFam2|chr12 (4079039-4079260)
               

               
               20-198, gnl|echTel1|scaffold_277001 (47300-47521)
               

               
               20-198, gnl|fr1|chrUn (175732332-175732077)
               

               
               20-198, gnl|hg17|chr6 (31652888-31653109)
               

               
               20-198, gnl|Hg17|chr6 (31652985-31653163)
               

               
               20-198, gnl|loxAfr1|scaffold_17944 (47388-47609)
               

               
               20-198, gnl|mm7|chr17 (33296766-33296548)
               

               
               20-198, gnl|Mm7|chr17 (33296667-33296492)
               

               
               20-198, gnl|monDom2|scaffold_42 (17917908-17917690)
               

               
               20-198, gnl|oryCun1|scaffold_200762 (36921-36703)
               

               
               20-198, gnl|panTro1|chr5 (32048854-32049075)
               

               
               20-198, gnl|rheMac2|chr4 (31211993-31212214)
               

               
               20-198, gnl|rn3|chr20 (3662608-3662826)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-198, gnl|bosTau2|chr23 (23243237-23243415)
               

               
               20-198, gnl|canFam2|chr12 (4079039-4079260)
               

               
               20-198, gnl|echTel1|scaffold_277001 (47300-47521)
               

               
               20-198, gnl|fr1|chrUn (175732332-175732077)
               

               
               20-198, gnl|hg17|chr6 (31652888-31653109)
               

               
               20-198, gnl|Hg17|chr6 (31652985-31653163)
               

               
               20-198, gnl|loxAfr1|scaffold_17944 (47388-47609)
               

               
               20-198, gnl|mm7|chr17 (33296766-33296548)
               

               
               20-198, gnl|Mm7|chr17 (33296667-33296492)
               

               
               20-198, gnl|monDom2|scaffold_42 (17917908-17917690)
               

               
               20-198, gnl|oryCun1|scaffold_200762 (36921-36703)
               

               
               20-198, gnl|panTro1|chr5 (32048854-32049075)
               

               
               20-198, gnl|rheMac2|chr4 (31211993-31212214)
               

               
               20-198, gnl|rn3|chr20 (3662608-3662826)

	20-198, gnl\|bosTau2\|chr23 (23243237-23243415)
	20-198, gnl\|canFam2\|chr12 (4079039-4079260)
	20-198, gnl\|echTel1\|scaffold_277001 (47300-47521)
	20-198, gnl\|fr1\|chrUn (175732332-175732077)
	20-198, gnl\|hg17\|chr6 (31652888-31653109)
	20-198, gnl\|Hg17\|chr6 (31652985-31653163)
	20-198, gnl\|loxAfr1\|scaffold_17944 (47388-47609)
	20-198, gnl\|mm7\|chr17 (33296766-33296548)
	20-198, gnl\|Mm7\|chr17 (33296667-33296492)
	20-198, gnl\|monDom2\|scaffold_42 (17917908-17917690)
	20-198, gnl\|oryCun1\|scaffold_200762 (36921-36703)
	20-198, gnl\|panTro1\|chr5 (32048854-32049075)
	20-198, gnl\|rheMac2\|chr4 (31211993-31212214)
	20-198, gnl\|rn3\|chr20 (3662608-3662826)