Non-Coding RNA Search

Ss1.1-unkn-PBL010027H01.5

Sequence:


               
               TAAAAAAATCTGTAAACAGAAAAAATTGAGAGGGAAATAAGCTAAATTTTTAAAAGTCTC
ATTGACTAATGGTACATTCCAACTGGATCCTCTTTCTCTTGTTTTGTTCTAAATAGTGCG
AAGACAAGGCAGGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAGGATGCTTTAT
GAGTTTATTCTGGAAAGAAGAATGACTTTAACTGATAGCATTGAACGCTGTCTGAAGAAA
GGTAATATCCTTACTTTTCAGTCACAGTCACAGAACTGGAAAATGTGCCACCCTGTAAAG
TGCTACTTGTTTATAGCACCACAAGGCTGTTTCACTCATAACTTTGTAATTGGCAGGGAA
TATGCCAGACTTGTTAGAATTCAAAATCAGACTTGTTAGAAGCTTTGTTTTTGTTTACTA
CAGTTGGAAGCTAGGAAGATTGGGGTGGAGTGTCATCTTTTCTTGTACTGGAAGAGATGA
CTGCCATTCTCTTTGTATATAAGAAAGGCTTGAAAGCTTGTGTCAGATGTCAACAAAAAG
TCTTTTTTAAAAAGCCATCCTACTTTATTTTTCTAAAATTGGAAAAGTATCATAACTTTT
TACCTCATTTTTTTATTTAAAACATCAGTCATACCTGATGGTGACATCATTTCAGGGTAT
CCTTCGGAATATTTGAATTCTAGAACTTTGTAATAGAGATTCTGGAATTCATATTGTTAT
AATCATAGAACTTTTAAGAACTTTTAAGAGACCTTACAGATTAAGTCTGGAATCATCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAAATCTGTAAACAGAAAAAATTGAGAGGGAAATAAGCTAAATTTTTAAAAGTCTC
ATTGACTAATGGTACATTCCAACTGGATCCTCTTTCTCTTGTTTTGTTCTAAATAGTGCG
AAGACAAGGCAGGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAGGATGCTTTAT
GAGTTTATTCTGGAAAGAAGAATGACTTTAACTGATAGCATTGAACGCTGTCTGAAGAAA
GGTAATATCCTTACTTTTCAGTCACAGTCACAGAACTGGAAAATGTGCCACCCTGTAAAG
TGCTACTTGTTTATAGCACCACAAGGCTGTTTCACTCATAACTTTGTAATTGGCAGGGAA
TATGCCAGACTTGTTAGAATTCAAAATCAGACTTGTTAGAAGCTTTGTTTTTGTTTACTA
CAGTTGGAAGCTAGGAAGATTGGGGTGGAGTGTCATCTTTTCTTGTACTGGAAGAGATGA
CTGCCATTCTCTTTGTATATAAGAAAGGCTTGAAAGCTTGTGTCAGATGTCAACAAAAAG
TCTTTTTTAAAAAGCCATCCTACTTTATTTTTCTAAAATTGGAAAAGTATCATAACTTTT
TACCTCATTTTTTTATTTAAAACATCAGTCATACCTGATGGTGACATCATTTCAGGGTAT
CCTTCGGAATATTTGAATTCTAGAACTTTGTAATAGAGATTCTGGAATTCATATTGTTAT
AATCATAGAACTTTTAAGAACTTTTAAGAGACCTTACAGATTAAGTCTGGAATCATCAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               120-239, + strand, RNAz p=0.956476
               

               
               609-761, - strand, RNAz p=0.987573

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.956476
               

               
               609-761, - strand, RNAz p=0.987573

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

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               609-761, BP155089 full-length enriched swine cDNA library, adult peripheral 
(dbj|BP155089.1|), blast E-value=0, identity=100% 
               

               
               609-761, BW971550 full-length enriched swine cDNA library, adult periphral 
(dbj|BW971550.1|), blast E-value=0, identity=99.35%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               609-761, BP155089 full-length enriched swine cDNA library, adult peripheral 
(dbj|BP155089.1|), blast E-value=0, identity=100% 
               

               
               609-761, BW971550 full-length enriched swine cDNA library, adult periphral 
(dbj|BW971550.1|), blast E-value=0, identity=99.35%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-780, gnl|bosTau2|chr4 (27624422-27623626)
               

               
               3-780, gnl|Hg17|chr7 (111690814-111691561)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-780, gnl|bosTau2|chr4 (27624422-27623626)
               

               
               3-780, gnl|Hg17|chr7 (111690814-111691561)

	120-239, + strand, RNAz p=0.956476
	609-761, - strand, RNAz p=0.987573

	609-761, BP155089 full-length enriched swine cDNA library, adult peripheral (dbj\|BP155089.1\|), blast E-value=0, identity=100%
	609-761, BW971550 full-length enriched swine cDNA library, adult periphral (dbj\|BW971550.1\|), blast E-value=0, identity=99.35%

	3-780, gnl\|bosTau2\|chr4 (27624422-27623626)
	3-780, gnl\|Hg17\|chr7 (111690814-111691561)