Non-Coding RNA Search

Ss1.1-unkn-SSTL10.5

Sequence:


               
               GGGCCGATCCCCAACACCGGGGCCGCCCTGGACTTTGTCTGAGGGACATCCTGACTGAGT
CTGCTGGAAGCCGGATAGCAGAGGGCATCCCCCAGCTCCTGATCGTCCTCACGGCCGACA
GGTCTGGGGATGACGTGAGGGGCCCCTCAGTGGTCCTGAAGAGGGGAGGGGCCGTGCCAT
TGGCATTGGCATTGGGAATGCCGACATCACCGAGATGCAAACCATCTCCTTCATCCCAGA
CTTCGCCGTGGCCATTCCCACCTTCCGGCAGCTAGGGACTGTCCAGCAGGTCATCTCTGA
GAGAGTGACCCGGCTCGACCGCGAGGAGCTGCGCCGGCTGCAGGCATCTGTGGTCCCTCC
GACAAGCCCAGGTGTCAGCGGCAAGCGGGATGTGGTCTTTCTCATCGATGGGTCCCAGAC
GGCTGGCCCTGAGTTCCAGTACATCCGCACTCTCATCGAGAGGCTGGTGGACTCCCTGGA
TGTGGGCTTCGACACGAGCCGGGTGGCGGTCATCCAGTTCAGCGAGGACCCCCGGGTGGA
GTTCCTGCTGAACGCCCACTCCAGCAAGACGAGGTGCAAACGCGGTGAGGCGGCTGCGGC
CCAAGCGGGAGGCGGATCACATCGGGGCGCCCTGGAGTACGTTGTCCAGAACATCTTCAA
GCGCTGGGAGCCCGATTGAAGAGCGTCCCCATTCCTGATCTCATTTCTTCGAAGTCGACG
ACAGTTACACTCGCGCAGACTCACAGTCGGTGCGCGCTGACATCGCCAGACGCGACCCGA
GACTGTTAATCTCCTGACCCGATCTGTCTCGTGACCTCGACTGCCACCTGACAAACTGTG
ACCTCCCTGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGATCCCCAACACCGGGGCCGCCCTGGACTTTGTCTGAGGGACATCCTGACTGAGT
CTGCTGGAAGCCGGATAGCAGAGGGCATCCCCCAGCTCCTGATCGTCCTCACGGCCGACA
GGTCTGGGGATGACGTGAGGGGCCCCTCAGTGGTCCTGAAGAGGGGAGGGGCCGTGCCAT
TGGCATTGGCATTGGGAATGCCGACATCACCGAGATGCAAACCATCTCCTTCATCCCAGA
CTTCGCCGTGGCCATTCCCACCTTCCGGCAGCTAGGGACTGTCCAGCAGGTCATCTCTGA
GAGAGTGACCCGGCTCGACCGCGAGGAGCTGCGCCGGCTGCAGGCATCTGTGGTCCCTCC
GACAAGCCCAGGTGTCAGCGGCAAGCGGGATGTGGTCTTTCTCATCGATGGGTCCCAGAC
GGCTGGCCCTGAGTTCCAGTACATCCGCACTCTCATCGAGAGGCTGGTGGACTCCCTGGA
TGTGGGCTTCGACACGAGCCGGGTGGCGGTCATCCAGTTCAGCGAGGACCCCCGGGTGGA
GTTCCTGCTGAACGCCCACTCCAGCAAGACGAGGTGCAAACGCGGTGAGGCGGCTGCGGC
CCAAGCGGGAGGCGGATCACATCGGGGCGCCCTGGAGTACGTTGTCCAGAACATCTTCAA
GCGCTGGGAGCCCGATTGAAGAGCGTCCCCATTCCTGATCTCATTTCTTCGAAGTCGACG
ACAGTTACACTCGCGCAGACTCACAGTCGGTGCGCGCTGACATCGCCAGACGCGACCCGA
GACTGTTAATCTCCTGACCCGATCTGTCTCGTGACCTCGACTGCCACCTGACAAACTGTG
ACCTCCCTGACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-318, + strand, RNAz p=0.8761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-318, + strand, RNAz p=0.8761

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-373, gnl|bosTau2|chr3 (83890849-83890475)
               

               
               1-373, gnl|Hg17|chr2 (238065427-238065053)
               

               
               1-373, gnl|Mm7|chr1 (90714510-90714136)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-373, gnl|bosTau2|chr3 (83890849-83890475)
               

               
               1-373, gnl|Hg17|chr2 (238065427-238065053)
               

               
               1-373, gnl|Mm7|chr1 (90714510-90714136)

	1-373, gnl\|bosTau2\|chr3 (83890849-83890475)
	1-373, gnl\|Hg17\|chr2 (238065427-238065053)
	1-373, gnl\|Mm7\|chr1 (90714510-90714136)