Non-Coding RNA Search

Ss1.1-unkn-UNL-P-F2-aa-g-06-0-UNL.s1.3

Sequence:


               
               GGCCGAAATATTGCAAATGACAGTGGATCATTTAAAAATGCTCCAGGCAACCGGGGGTAA
AGGCTACTTTGACGCACATGCTCTCGCCATGGACTTCATGAGCATTGGATTCCGAGAGTG
CTTAACAGAAGTGGCAAGGTACTTGAGCTCCGTGGAAGGCCTGGACTCCTCCGCACCACT
GGGCGGCCGCATTCCACCATCTCCCGGCAGCCCTGTTCCAACCCAGTGGACTCCACACCT
CCGAGTCCACGCCTTGTCGCCTCTCCACCGCTTCAGAAGTGCCTCCTGCCCACGGCTCCG
CCCTCCTCACGGCCACGTTTGCCCACGCAGATTCTGCCCTTCGGATGCCATCGACGGGCA
GCGTGGCCCCCTGCGTGCCACCTCTTTCCACTTCTCTCTTGTCCCTGTCAGCCACTGTCC
ATGCGGCCGCCGCCGCAGCCACGGCAGCTGCACACAGCTTCCCTCTGTCCTTCGCTGGGG
CATTCCCCATGCTCCCCCCAAATGCAGCTGCGGCAGTGGCAGCCGCGACCGCCATCAGCC
CCCCCTTGTCAGTATCAGCCACGTCCAGCCCTCAGCAGACAAGCAGTGGAACAAACAATA
AACCTTACCGACCCTGGGGGACAGAAGTGGGAGCTTTTTAAGTTTTCACTGAACTTCTTG
CAACAGTAACTGAATGTCCTTAATTTCAGAGTCAGCTCAAAACTTCTGCACCCTGAAAGT
AGCCATACAGATTCTGCCTGCAGATCCACAAAGGAACACTAAAGCTAAATTTGAGACACA
AACCTCACATGTGGAAATGTGGTATTATCTTTTTTCTCTTTTTTGACTTAAGGCAGTTTG
GTAACTGACATCAGCAACTTTCACACTCGTTTCCATTTAGAAGTTTCCTGGAAAATACAT
GAACTATATTATCCAGCAGTGCATCAGGATGCCTGAATTGGGGAGGAAAAGTGCCCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGAAATATTGCAAATGACAGTGGATCATTTAAAAATGCTCCAGGCAACCGGGGGTAA
AGGCTACTTTGACGCACATGCTCTCGCCATGGACTTCATGAGCATTGGATTCCGAGAGTG
CTTAACAGAAGTGGCAAGGTACTTGAGCTCCGTGGAAGGCCTGGACTCCTCCGCACCACT
GGGCGGCCGCATTCCACCATCTCCCGGCAGCCCTGTTCCAACCCAGTGGACTCCACACCT
CCGAGTCCACGCCTTGTCGCCTCTCCACCGCTTCAGAAGTGCCTCCTGCCCACGGCTCCG
CCCTCCTCACGGCCACGTTTGCCCACGCAGATTCTGCCCTTCGGATGCCATCGACGGGCA
GCGTGGCCCCCTGCGTGCCACCTCTTTCCACTTCTCTCTTGTCCCTGTCAGCCACTGTCC
ATGCGGCCGCCGCCGCAGCCACGGCAGCTGCACACAGCTTCCCTCTGTCCTTCGCTGGGG
CATTCCCCATGCTCCCCCCAAATGCAGCTGCGGCAGTGGCAGCCGCGACCGCCATCAGCC
CCCCCTTGTCAGTATCAGCCACGTCCAGCCCTCAGCAGACAAGCAGTGGAACAAACAATA
AACCTTACCGACCCTGGGGGACAGAAGTGGGAGCTTTTTAAGTTTTCACTGAACTTCTTG
CAACAGTAACTGAATGTCCTTAATTTCAGAGTCAGCTCAAAACTTCTGCACCCTGAAAGT
AGCCATACAGATTCTGCCTGCAGATCCACAAAGGAACACTAAAGCTAAATTTGAGACACA
AACCTCACATGTGGAAATGTGGTATTATCTTTTTTCTCTTTTTTGACTTAAGGCAGTTTG
GTAACTGACATCAGCAACTTTCACACTCGTTTCCATTTAGAAGTTTCCTGGAAAATACAT
GAACTATATTATCCAGCAGTGCATCAGGATGCCTGAATTGGGGAGGAAAAGTGCCCTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8VIH5_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VIH5_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-522, - strand, RNAz p=0.994361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-522, - strand, RNAz p=0.994361

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               170-960, gnl|bosTau2|chr9 (13052406-13051610)
               

               
               170-960, gnl|Hg17|chr6 (126122170-126122974)
               

               
               170-960, gnl|Mm7|chr10 (30614857-30614061)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-960, gnl|bosTau2|chr9 (13052406-13051610)
               

               
               170-960, gnl|Hg17|chr6 (126122170-126122974)
               

               
               170-960, gnl|Mm7|chr10 (30614857-30614061)

	170-960, gnl\|bosTau2\|chr9 (13052406-13051610)
	170-960, gnl\|Hg17\|chr6 (126122170-126122974)
	170-960, gnl\|Mm7\|chr10 (30614857-30614061)