Non-Coding RNA Search

Tes1-TES01A070062

Sequence:


               
               GAGCGAGCGGCGAGCGGAGGCAGAGTGCAGCCCTCCCGTCGCGCGCGATGCTGCCCTGGA
CGGTGCTCGGCCTGGCCCTAAGCCTGCGGCTGGCGCGGAGCGGAGCGGAGCGTGGCCCCC
CGACATCCGCCCCCCAGGGGGACCTGCTGTTTCTGTTGGACAGCTCGGCCAGCGTGTCTC
ATTATGAGTTTTCCCGAGTTCGGGAGTTTTTGGGGCGGCTGGCGGCCCTGTTGCCCCTGG
GCCCTGGGGCCCTGCGTGCCAGCCTGGTGCATGTGGGCAGCCGGCCACACACCGAGTTCC
CCTTCGGCCAGCACAGCTCCGGCTCGGCCGTCCAGGATGCCATACGCGCTGCAGTCCAGC
GCATGGGTGACACCAACACTGGCCTGGCGCTGGCATACGCCAAGGAGCAGCTGTTTGCCA
AGGAGGCGGGGGCCCGGCCAGGGGTGCCCAAGGTGCTGGTGTGGGTGACAGACGGCGGCT
CCAGCGACCCCGTGGGGCCCCCCATGCAGGAGCTGAAGGACCTGNGCGCCACTGTCTTCA
TCGTCAGCACCGGCCGCGGCAACCTCCTGGAGCTGTCGGGCGCCGCCTCGGCCCCCGCCG
AGAAGCACCTGCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGAGCGGCGAGCGGAGGCAGAGTGCAGCCCTCCCGTCGCGCGCGATGCTGCCCTGGA
CGGTGCTCGGCCTGGCCCTAAGCCTGCGGCTGGCGCGGAGCGGAGCGGAGCGTGGCCCCC
CGACATCCGCCCCCCAGGGGGACCTGCTGTTTCTGTTGGACAGCTCGGCCAGCGTGTCTC
ATTATGAGTTTTCCCGAGTTCGGGAGTTTTTGGGGCGGCTGGCGGCCCTGTTGCCCCTGG
GCCCTGGGGCCCTGCGTGCCAGCCTGGTGCATGTGGGCAGCCGGCCACACACCGAGTTCC
CCTTCGGCCAGCACAGCTCCGGCTCGGCCGTCCAGGATGCCATACGCGCTGCAGTCCAGC
GCATGGGTGACACCAACACTGGCCTGGCGCTGGCATACGCCAAGGAGCAGCTGTTTGCCA
AGGAGGCGGGGGCCCGGCCAGGGGTGCCCAAGGTGCTGGTGTGGGTGACAGACGGCGGCT
CCAGCGACCCCGTGGGGCCCCCCATGCAGGAGCTGAAGGACCTGNGCGCCACTGTCTTCA
TCGTCAGCACCGGCCGCGGCAACCTCCTGGAGCTGTCGGGCGCCGCCTCGGCCCCCGCCG
AGAAGCACCTGCACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875992|ref|XP_582281.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875992|ref|XP_582281.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               114-232, - strand, RNAz p=0.860266
               

               
               353-472, + strand, RNAz p=0.977339

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-232, - strand, RNAz p=0.860266
               

               
               353-472, + strand, RNAz p=0.977339

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-616, gnl|bosTau2|chr16 (37832022-37831520)
               

               
               114-616, gnl|Hg17|chr1 (1457573-1458075)
               

               
               114-616, gnl|Mm7|chr4 (154762809-154762307)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-616, gnl|bosTau2|chr16 (37832022-37831520)
               

               
               114-616, gnl|Hg17|chr1 (1457573-1458075)
               

               
               114-616, gnl|Mm7|chr4 (154762809-154762307)

	114-232, - strand, RNAz p=0.860266
	353-472, + strand, RNAz p=0.977339

	114-616, gnl\|bosTau2\|chr16 (37832022-37831520)
	114-616, gnl\|Hg17\|chr1 (1457573-1458075)
	114-616, gnl\|Mm7\|chr4 (154762809-154762307)