Non-Coding RNA Search

Tes1-TES01D030108

Sequence:


               
               CTTTTCATGAGGAACTGAGGCACAGAGAAGTTGTATAACTGTAGCTCGCTCTAGTGACCA
TCCTCCTAACTGTTCTACATGGAAGGCTAGTAGGGGGACAAGGAGGAGAGGATTCCACCC
AGGAACCTCTGGGAAGCCCTGGAGAGTTGGCATGGCCTTCTGGTTCTAGCCCTGATTTTT
GGCTTTTGGGTTCTGTTACAGGGAAAGAGCATCAGGGGGTCCGGAGGCAGCCGACTTCTC
TGACCAGCTCTCCTTAGGGAGCAGTGGGGACCTTGGGTGTGGGCGAGGGGCTCTGCTCGC
TCAGGCCTGCCGGGACCTCCCCAGCATCCGCAGCTGCTACCTGACCCACTGCTCACTGGC
CCGAGCTGGCCTGCTGGCCTCTCAAGCCTTGTACCGAGGGGAACTACACCGAATCCCAGC
CTTGCTGCTCCCTGTGCCCAGGGAGCCACTGCTGCCCACTGACTGGCCTTTCCTGCCATT
GATTCACCTCTACCACCGGGCCACTGACACCCCCTCAGGGCTCCCACCTGCTGACACTGT
GGGCACAGCCATGAGGGCCCTGCAGTGGGTGCTAATCCTGGAGAGCTGGCGTCCCCAGGC
CCTCTGGGCTGTGCCTCCTGCTGCCTGCCTGGCACGGCTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCATGAGGAACTGAGGCACAGAGAAGTTGTATAACTGTAGCTCGCTCTAGTGACCA
TCCTCCTAACTGTTCTACATGGAAGGCTAGTAGGGGGACAAGGAGGAGAGGATTCCACCC
AGGAACCTCTGGGAAGCCCTGGAGAGTTGGCATGGCCTTCTGGTTCTAGCCCTGATTTTT
GGCTTTTGGGTTCTGTTACAGGGAAAGAGCATCAGGGGGTCCGGAGGCAGCCGACTTCTC
TGACCAGCTCTCCTTAGGGAGCAGTGGGGACCTTGGGTGTGGGCGAGGGGCTCTGCTCGC
TCAGGCCTGCCGGGACCTCCCCAGCATCCGCAGCTGCTACCTGACCCACTGCTCACTGGC
CCGAGCTGGCCTGCTGGCCTCTCAAGCCTTGTACCGAGGGGAACTACACCGAATCCCAGC
CTTGCTGCTCCCTGTGCCCAGGGAGCCACTGCTGCCCACTGACTGGCCTTTCCTGCCATT
GATTCACCTCTACCACCGGGCCACTGACACCCCCTCAGGGCTCCCACCTGCTGACACTGT
GGGCACAGCCATGAGGGCCCTGCAGTGGGTGCTAATCCTGGAGAGCTGGCGTCCCCAGGC
CCTCTGGGCTGTGCCTCCTGCTGCCTGCCTGGCACGGCTCATGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-151, - strand, RNAz p=0.849838
               

               
               526-644, + strand, RNAz p=0.866374

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-151, - strand, RNAz p=0.849838
               

               
               526-644, + strand, RNAz p=0.866374

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               551-661, + strand, RNAmicro p=0.997017

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               551-661, + strand, RNAmicro p=0.997017

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-644, gnl|bosTau2|chr10 (23029441-23028841)
               

               
               41-644, gnl|Hg17|chr15 (39600815-39600195)
               

               
               41-644, gnl|Mm7|chr2 (119509218-119508655)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-644, gnl|bosTau2|chr10 (23029441-23028841)
               

               
               41-644, gnl|Hg17|chr15 (39600815-39600195)
               

               
               41-644, gnl|Mm7|chr2 (119509218-119508655)

	41-151, - strand, RNAz p=0.849838
	526-644, + strand, RNAz p=0.866374

	41-644, gnl\|bosTau2\|chr10 (23029441-23028841)
	41-644, gnl\|Hg17\|chr15 (39600815-39600195)
	41-644, gnl\|Mm7\|chr2 (119509218-119508655)