Non-Coding RNA Search

Tes1-TES01D120008

Sequence:


               
               GGAAAGGAAAAGAAATggagttcccatccttgcgcagaggttaacgaatccgactaggaa
ccatgaggttgcgggttcgatccctggcctcgctcagtgggttgaggagccggcgttgcc
gtgagctgtggtgtaggttgcagacgcagctcggatcccaagttgctgtgactctggtgt
aggccggtggttacagctctgattcgacccctagcctgggaacctccatatgccgtggga
ggggccctAGAAAAGGCAAAAAGACAAAAAAAGAAAAAGAAAAAGAAAGAAAGAAAAAAG
AAAGACTTTCTAGCTTCATGCTGAGTGGGCCACATGCCTTCCTGGTGGGGGTAGGGCTGG
GGGGTAGGAGCAAGAACTTTCTGGCCAGCAGGGGGAGGTGGAGTCGCCCTCTTAAGGCTC
AGGGAGAGTCAAGATGAGCTATTGAGTTTGGAATTTGGCAAGCAGCGTTGTCCAAAACAC
AATTTTCCATTCCCAGGCAAGGGGAGGCTGAGAGGGGAAGGGAGCCAGAAGAGTGAGCCT
GGGAAGGCAGCCTGGCAGGTGGCGCTCCCTAAGGTGGGGGAGGCCTAAGCCAGAGGGCCC
CCTCCCTGCCCCCAGCCTCATGTCTGGGTCTCATTACTCTAGCAACACACACAGGTGGAA
AAAATGCTCTGGGGACATTTTTTTCCAGAACAGGAGCAGAAGCCAGACCCAGGGCGCTCT
CCCCTCCATCCTTCCACATAAACACTTGGGCGGACAAACCAACGAGCAGGTGTGTTCACA
CACACACACACACACACACACACACACACACACACACAGAGCCCCTTGAGCCCTGCCCCT
GGCACACAGATCACAGAAGAGGGTCACTGGGCTGGAGGATGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGGAAAAGAAATggagttcccatccttgcgcagaggttaacgaatccgactaggaa
ccatgaggttgcgggttcgatccctggcctcgctcagtgggttgaggagccggcgttgcc
gtgagctgtggtgtaggttgcagacgcagctcggatcccaagttgctgtgactctggtgt
aggccggtggttacagctctgattcgacccctagcctgggaacctccatatgccgtggga
ggggccctAGAAAAGGCAAAAAGACAAAAAAAGAAAAAGAAAAAGAAAGAAAGAAAAAAG
AAAGACTTTCTAGCTTCATGCTGAGTGGGCCACATGCCTTCCTGGTGGGGGTAGGGCTGG
GGGGTAGGAGCAAGAACTTTCTGGCCAGCAGGGGGAGGTGGAGTCGCCCTCTTAAGGCTC
AGGGAGAGTCAAGATGAGCTATTGAGTTTGGAATTTGGCAAGCAGCGTTGTCCAAAACAC
AATTTTCCATTCCCAGGCAAGGGGAGGCTGAGAGGGGAAGGGAGCCAGAAGAGTGAGCCT
GGGAAGGCAGCCTGGCAGGTGGCGCTCCCTAAGGTGGGGGAGGCCTAAGCCAGAGGGCCC
CCTCCCTGCCCCCAGCCTCATGTCTGGGTCTCATTACTCTAGCAACACACACAGGTGGAA
AAAATGCTCTGGGGACATTTTTTTCCAGAACAGGAGCAGAAGCCAGACCCAGGGCGCTCT
CCCCTCCATCCTTCCACATAAACACTTGGGCGGACAAACCAACGAGCAGGTGTGTTCACA
CACACACACACACACACACACACACACACACACACACAGAGCCCCTTGAGCCCTGCCCCT
GGCACACAGATCACAGAAGAGGGTCACTGGGCTGGAGGATGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               483-636, - strand, RNAz p=0.965591

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-636, - strand, RNAz p=0.965591

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               288-884, gnl|bosTau2|chr19 (29199654-29200221)
               

               
               288-884, gnl|Hg17|chr17 (45606246-45605650)
               

               
               288-884, gnl|Mm7|chr11 (95074202-95074763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-884, gnl|bosTau2|chr19 (29199654-29200221)
               

               
               288-884, gnl|Hg17|chr17 (45606246-45605650)
               

               
               288-884, gnl|Mm7|chr11 (95074202-95074763)

	288-884, gnl\|bosTau2\|chr19 (29199654-29200221)
	288-884, gnl\|Hg17\|chr17 (45606246-45605650)
	288-884, gnl\|Mm7\|chr11 (95074202-95074763)