Non-Coding RNA Search

Tes1-TES01E010041

Sequence:


               
               GACCACATGAAGGTGCACGCCAGCAAGTTGGGCCCACTGCGTGCCCCGGGGCCTGGTTCT
GGGCCTGCCCGGGCCCCCCAGCCTCCTGACCTGGGCCTGCTGGCCTATGAGCCTCTGGGC
CCTGCGCTCCTCTTGGCCCCAGCGCCCACACCGGCTGAGCGCCGCGAGCCTCCAAGCCTC
CTGGGCTACCTGAGTCTGCGAGCCGGTGAGGCCCGGCCAAATGGTGAGGGCGCTGAGCCT
GGGGCTGGCCGCAGCTTTGGAGGTTTCCGCCCACTTCCCTCTGCTCTCCCGGCCCGGGCT
CGCCGGCACCGCACTGAGGAGCCAGAAGAGGAAGAGGAGATGGTGGAGACAGAGGAAGAG
ACCTGGGCCCGGAGCAGGGCGCTGGGCCCTCTGGCCTCACTGCCTCCGCGCCCAGGTGAG
GGCTCAGGGCACAATGCGCCTGCTGCGGGGGCCCAGGCAAGGTCCACGACCACGCAGGAA
GAGAATGGGCTGTTAGTTGGAGGGACCCGGCCTGAAGGAGGCCGAGGGGCCACCGGCAAG
GATTGCCCGTTCTGCGGGAAATCCTTCCGCTCAGCGCATCACCTCAAAGTGCACCTGCGA
GTGCACACAGGCGAGCGCCCCTACAAGTGTCCACACTGCGACTATGCGGGCACCCAGTCC
GGCTCGCTCAAGTACCACCTGCAGCGTCACCACCGGGAGCAGAAGAGCGGGGCCGGCCCT
GGGCCGCCCCCCGAGCCGCCGCCCTCCTCCCAGCGGGGTTCGGCCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCACATGAAGGTGCACGCCAGCAAGTTGGGCCCACTGCGTGCCCCGGGGCCTGGTTCT
GGGCCTGCCCGGGCCCCCCAGCCTCCTGACCTGGGCCTGCTGGCCTATGAGCCTCTGGGC
CCTGCGCTCCTCTTGGCCCCAGCGCCCACACCGGCTGAGCGCCGCGAGCCTCCAAGCCTC
CTGGGCTACCTGAGTCTGCGAGCCGGTGAGGCCCGGCCAAATGGTGAGGGCGCTGAGCCT
GGGGCTGGCCGCAGCTTTGGAGGTTTCCGCCCACTTCCCTCTGCTCTCCCGGCCCGGGCT
CGCCGGCACCGCACTGAGGAGCCAGAAGAGGAAGAGGAGATGGTGGAGACAGAGGAAGAG
ACCTGGGCCCGGAGCAGGGCGCTGGGCCCTCTGGCCTCACTGCCTCCGCGCCCAGGTGAG
GGCTCAGGGCACAATGCGCCTGCTGCGGGGGCCCAGGCAAGGTCCACGACCACGCAGGAA
GAGAATGGGCTGTTAGTTGGAGGGACCCGGCCTGAAGGAGGCCGAGGGGCCACCGGCAAG
GATTGCCCGTTCTGCGGGAAATCCTTCCGCTCAGCGCATCACCTCAAAGTGCACCTGCGA
GTGCACACAGGCGAGCGCCCCTACAAGTGTCCACACTGCGACTATGCGGGCACCCAGTCC
GGCTCGCTCAAGTACCACCTGCAGCGTCACCACCGGGAGCAGAAGAGCGGGGCCGGCCCT
GGGCCGCCCCCCGAGCCGCCGCCCTCCTCCCAGCGGGGTTCGGCCCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               322-441, + strand, RNAz p=0.577686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-441, + strand, RNAz p=0.577686

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-478, gnl|bosTau2|chr10 (15635760-15635284)
               

               
               2-478, gnl|Hg17|chr14 (20630340-20629864)
               

               
               2-478, gnl|Mm7|chr14 (47342384-47341908)
               


               
               608-766, gnl|bosTau2|chr10 (15634636-15634478)
               

               
               608-766, gnl|Hg17|chr14 (20629142-20628984)
               

               
               608-766, gnl|Mm7|chr14 (47340830-47340672)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-478, gnl|bosTau2|chr10 (15635760-15635284)
               

               
               2-478, gnl|Hg17|chr14 (20630340-20629864)
               

               
               2-478, gnl|Mm7|chr14 (47342384-47341908)
               


               
               608-766, gnl|bosTau2|chr10 (15634636-15634478)
               

               
               608-766, gnl|Hg17|chr14 (20629142-20628984)
               

               
               608-766, gnl|Mm7|chr14 (47340830-47340672)

	2-478, gnl\|bosTau2\|chr10 (15635760-15635284)
	2-478, gnl\|Hg17\|chr14 (20630340-20629864)
	2-478, gnl\|Mm7\|chr14 (47342384-47341908)

	608-766, gnl\|bosTau2\|chr10 (15634636-15634478)
	608-766, gnl\|Hg17\|chr14 (20629142-20628984)
	608-766, gnl\|Mm7\|chr14 (47340830-47340672)