Non-Coding RNA Search

Tes1-TES01F020014

Sequence:


               
               AGTGGATCCACCCGAGAGACATCCCAACACACGGAGACTCACTCGAGGGACGCTGTCACG
TGGATGGCCTCCTCCTCCTCCTAGCGAGGGACCCTGGATCTAGAAAGAGCTCGGTTTGGT
GGCTTCCGCTTTCGACAACTAGGGGGAACTTCACCCGTGTGTTCTGACATCCCCTCCTGC
GGCCACACCTTANAGGGGCAAAAGAGCAAAGGCTCGGAGAAGAACCGCGCCCCTCTGAAG
GCTGCGCCACGCCCGGGCTGTGACTTGCAGCAGCCGTGCCCAGGAGGGGCACCAAAAGGC
GGGTTTGGAGGGCACCAACGCCCTTCTGACAATGGCCTGTGTGGCATAGAAATAGAAGTT
GGTCATCCTGGGGCTGGGCTGTCACTTCCGCCAGCCCCCCACCCCCCACCCCGGGAGGAA
CGGCAGCAAGGGCCGGCCAGCAACCTGGCCCCTCCAGTGGCCTGGAGAGCCCGCAGGCAG
AAGCCAGCCTCGCTGTGCCGTGACTTCACAGCAGCTGGGCCTGGGGTAGAGGGGGCGCTC
GAGGGCTTGCCGAGGAAGCGGGCCCTTCTGATGGGCCCCCCGAGGCTGGGAAGCAGGGTC
CCACAGTGACCCTGTGACCTTAGCTAGAAGGTCCTCTGGAATGGCCTCCGGGCCACGGCA
GTGTCTCTCTGCGACATCTCCATCCTGAGCCCCGGGCTGGAGAGAAGCTGACGGCACTTG
TTACATAGCGATTCTTTTTGCTCTGGGGGCCTCAGTCCTTGCAGTCGTTGTGGATCTGTG
TCTGAAATCACTGCTTCCCTCTCTCTTTTNCAGCGGTTATGACGTATGTGCTACAACTGT
CATTTGGGAGCGAGCGCGGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGATCCACCCGAGAGACATCCCAACACACGGAGACTCACTCGAGGGACGCTGTCACG
TGGATGGCCTCCTCCTCCTCCTAGCGAGGGACCCTGGATCTAGAAAGAGCTCGGTTTGGT
GGCTTCCGCTTTCGACAACTAGGGGGAACTTCACCCGTGTGTTCTGACATCCCCTCCTGC
GGCCACACCTTANAGGGGCAAAAGAGCAAAGGCTCGGAGAAGAACCGCGCCCCTCTGAAG
GCTGCGCCACGCCCGGGCTGTGACTTGCAGCAGCCGTGCCCAGGAGGGGCACCAAAAGGC
GGGTTTGGAGGGCACCAACGCCCTTCTGACAATGGCCTGTGTGGCATAGAAATAGAAGTT
GGTCATCCTGGGGCTGGGCTGTCACTTCCGCCAGCCCCCCACCCCCCACCCCGGGAGGAA
CGGCAGCAAGGGCCGGCCAGCAACCTGGCCCCTCCAGTGGCCTGGAGAGCCCGCAGGCAG
AAGCCAGCCTCGCTGTGCCGTGACTTCACAGCAGCTGGGCCTGGGGTAGAGGGGGCGCTC
GAGGGCTTGCCGAGGAAGCGGGCCCTTCTGATGGGCCCCCCGAGGCTGGGAAGCAGGGTC
CCACAGTGACCCTGTGACCTTAGCTAGAAGGTCCTCTGGAATGGCCTCCGGGCCACGGCA
GTGTCTCTCTGCGACATCTCCATCCTGAGCCCCGGGCTGGAGAGAAGCTGACGGCACTTG
TTACATAGCGATTCTTTTTGCTCTGGGGGCCTCAGTCCTTGCAGTCGTTGTGGATCTGTG
TCTGAAATCACTGCTTCCCTCTCTCTTTTNCAGCGGTTATGACGTATGTGCTACAACTGT
CATTTGGGAGCGAGCGCGGACGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               232-404, + strand, RNAz p=0.999954
               

               
               513-626, + strand, RNAz p=0.820429

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-404, + strand, RNAz p=0.999954
               

               
               513-626, + strand, RNAz p=0.820429

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               5-453, gnl|bosTau2|chrX (14178778-14178339)
               

               
               5-453, gnl|Hg17|chrX (152099803-152100295)
               

               
               5-453, gnl|Mm7|chrX (68742868-68743319)
               


               
               493-853, gnl|bosTau2|chrX (14178340-14177966)
               

               
               493-853, gnl|Hg17|chrX (152100294-152100621)
               

               
               493-853, gnl|Mm7|chrX (68743310-68743709)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-453, gnl|bosTau2|chrX (14178778-14178339)
               

               
               5-453, gnl|Hg17|chrX (152099803-152100295)
               

               
               5-453, gnl|Mm7|chrX (68742868-68743319)
               


               
               493-853, gnl|bosTau2|chrX (14178340-14177966)
               

               
               493-853, gnl|Hg17|chrX (152100294-152100621)
               

               
               493-853, gnl|Mm7|chrX (68743310-68743709)

	232-404, + strand, RNAz p=0.999954
	513-626, + strand, RNAz p=0.820429

	5-453, gnl\|bosTau2\|chrX (14178778-14178339)
	5-453, gnl\|Hg17\|chrX (152099803-152100295)
	5-453, gnl\|Mm7\|chrX (68742868-68743319)

	493-853, gnl\|bosTau2\|chrX (14178340-14177966)
	493-853, gnl\|Hg17\|chrX (152100294-152100621)
	493-853, gnl\|Mm7\|chrX (68743310-68743709)