Non-Coding RNA Search

Tes1-TES01F020033

Sequence:


               
               GATGTTGCAGACTCCGCATGGACAGAAAAGAGATTAAGGCGGCAGTGAAGGTGTCGAGGG
GCTAACAGCCCTCCCCCATGTCCCCCCCACCCTCACTAGCTTTGTGGTTGGTTCACTCTA
TGGCCTTCAGGTCCTGAGGTAGATGCTGATGGTTTTGCAAAGCCTTTCCCACCTTCTATT
CATATTCTAGAAGAGGAAGCTTCACGGACCTACACAAGGCCTCCTTTTGTGTTTGTTAAT
CCAGCACCACTGGCTTTTATCTGTGAATTCCTTCAAGAGTCTGGTCTCATTTCAGCATTT
ATGGTTTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTCTTTCGCAAGTATTTTAGT
GAGAATTTGGGAACTGTTGCATCCAGAACTGGTAAGCTGATTCCATTTTAACCAGCTCAG
CTCTTTCTTGGAAACCTAATCTTTTATTAAACATTAGGAAGTGCTGAGCTTGCAAGAGAG
AACCCAATTCTCTAGGGACATGCTGACTTATTAAAGAGAGATGATAGTTTGTGACAGATC
AGCCCTCAGCTGTTGAATTTATATTGTCCCAGATTTTTAAGTATTCATGTGGTCTCTGAG
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTTGCAGACTCCGCATGGACAGAAAAGAGATTAAGGCGGCAGTGAAGGTGTCGAGGG
GCTAACAGCCCTCCCCCATGTCCCCCCCACCCTCACTAGCTTTGTGGTTGGTTCACTCTA
TGGCCTTCAGGTCCTGAGGTAGATGCTGATGGTTTTGCAAAGCCTTTCCCACCTTCTATT
CATATTCTAGAAGAGGAAGCTTCACGGACCTACACAAGGCCTCCTTTTGTGTTTGTTAAT
CCAGCACCACTGGCTTTTATCTGTGAATTCCTTCAAGAGTCTGGTCTCATTTCAGCATTT
ATGGTTTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTCTTTCGCAAGTATTTTAGT
GAGAATTTGGGAACTGTTGCATCCAGAACTGGTAAGCTGATTCCATTTTAACCAGCTCAG
CTCTTTCTTGGAAACCTAATCTTTTATTAAACATTAGGAAGTGCTGAGCTTGCAAGAGAG
AACCCAATTCTCTAGGGACATGCTGACTTATTAAAGAGAGATGATAGTTTGTGACAGATC
AGCCCTCAGCTGTTGAATTTATATTGTCCCAGATTTTTAAGTATTCATGTGGTCTCTGAG
G

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               149-267, - strand, RNAz p=0.851132
               

               
               404-501, - strand, RNAz p=0.980842

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-267, - strand, RNAz p=0.851132
               

               
               404-501, - strand, RNAz p=0.980842

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-316, gnl|bosTau2|chr25 (26217868-26217568)
               

               
               4-316, gnl|Hg17|chr7 (70806466-70806140)
               


               
               325-601, gnl|bosTau2|chr25 (26217587-26217314)
               

               
               325-601, gnl|Hg17|chr7 (70806159-70805882)
               

               
               325-601, gnl|Mm7|chr5 (130001297-130001591)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-316, gnl|bosTau2|chr25 (26217868-26217568)
               

               
               4-316, gnl|Hg17|chr7 (70806466-70806140)
               


               
               325-601, gnl|bosTau2|chr25 (26217587-26217314)
               

               
               325-601, gnl|Hg17|chr7 (70806159-70805882)
               

               
               325-601, gnl|Mm7|chr5 (130001297-130001591)

	149-267, - strand, RNAz p=0.851132
	404-501, - strand, RNAz p=0.980842

	4-316, gnl\|bosTau2\|chr25 (26217868-26217568)
	4-316, gnl\|Hg17\|chr7 (70806466-70806140)

	325-601, gnl\|bosTau2\|chr25 (26217587-26217314)
	325-601, gnl\|Hg17\|chr7 (70806159-70805882)
	325-601, gnl\|Mm7\|chr5 (130001297-130001591)