Non-Coding RNA Search

Tes1-TES01F030102

Sequence:


               
               GAGGGAGTTCTGGAAGCAGTGTCGGAGGTGGCAGTGGGAAAACCCTTTCAATGGAGAATA
TTCAATCCTTGAATGCTGCCTATGCCACTTCTGGCCCTATGTACCTAAGTGACCATGAAA
ATGTGGGTTCAGAAACACCTAAAAGCACCATGACACTTGGCCGATCTGGAGGACGTCTGC
CTTATGGTGTGAGGATGACTGCCATGGGCAGTAGCCCCAATATAGCGAGCAGTGGGGTTG
CTAGTGACACTATCGCATTTGGAGAGCATCACCTCCCTCCTGTGAGCATGGCATCTACCG
TTCCTCACTCTCTTCGTCAGGCAAGAGATAATACAATCATGGATCTTCAGACACAGCTGA
AGGAAGTATTAAGAGAGAATGATCTCTTGCGAAAGGATGTAGAAGTAAAGGAGAGCAAAT
TAAGTTCTTCAATGAATAGCATCAAGACCTTCTGGAGCCCAGAGCTGAAGAAAGAACGAG
CCCTGAGAAAAGATGAAGCTTCCAAAATCACTATTTGGAAGGAACAGTATAGAGTTGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGAGTTCTGGAAGCAGTGTCGGAGGTGGCAGTGGGAAAACCCTTTCAATGGAGAATA
TTCAATCCTTGAATGCTGCCTATGCCACTTCTGGCCCTATGTACCTAAGTGACCATGAAA
ATGTGGGTTCAGAAACACCTAAAAGCACCATGACACTTGGCCGATCTGGAGGACGTCTGC
CTTATGGTGTGAGGATGACTGCCATGGGCAGTAGCCCCAATATAGCGAGCAGTGGGGTTG
CTAGTGACACTATCGCATTTGGAGAGCATCACCTCCCTCCTGTGAGCATGGCATCTACCG
TTCCTCACTCTCTTCGTCAGGCAAGAGATAATACAATCATGGATCTTCAGACACAGCTGA
AGGAAGTATTAAGAGAGAATGATCTCTTGCGAAAGGATGTAGAAGTAAAGGAGAGCAAAT
TAAGTTCTTCAATGAATAGCATCAAGACCTTCTGGAGCCCAGAGCTGAAGAAAGAACGAG
CCCTGAGAAAAGATGAAGCTTCCAAAATCACTATTTGGAAGGAACAGTATAGAGTTGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839963|ref|XP_597487.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839963|ref|XP_597487.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-319, - strand, RNAz p=0.84991
               

               
               360-536, + strand, RNAz p=0.953619

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.84991
               

               
               360-536, + strand, RNAz p=0.953619

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-540, gnl|bosTau2|chr5 (65544948-65544409)
               

               
               1-540, gnl|Hg17|chr12 (1007446-1007985)
               

               
               1-540, gnl|Mm7|chr6 (119850240-119849701)
               


               
               14-536, gnl|bosTau2|chr22 (33533783-33534326)
               

               
               14-536, gnl|Hg17|chr3 (56443980-56443437)
               

               
               14-536, gnl|Mm7|chr14 (25085528-25086071)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr5 (65544948-65544409)
               

               
               1-540, gnl|Hg17|chr12 (1007446-1007985)
               

               
               1-540, gnl|Mm7|chr6 (119850240-119849701)
               


               
               14-536, gnl|bosTau2|chr22 (33533783-33534326)
               

               
               14-536, gnl|Hg17|chr3 (56443980-56443437)
               

               
               14-536, gnl|Mm7|chr14 (25085528-25086071)

	200-319, - strand, RNAz p=0.84991
	360-536, + strand, RNAz p=0.953619

	1-540, gnl\|bosTau2\|chr5 (65544948-65544409)
	1-540, gnl\|Hg17\|chr12 (1007446-1007985)
	1-540, gnl\|Mm7\|chr6 (119850240-119849701)

	14-536, gnl\|bosTau2\|chr22 (33533783-33534326)
	14-536, gnl\|Hg17\|chr3 (56443980-56443437)
	14-536, gnl\|Mm7\|chr14 (25085528-25086071)