Non-Coding RNA Search

Tes1-TES01G100071

Sequence:


               
               GGCAGCGCCCCTGAGGGGAAGGCCCTGGGGAAGGAGGGGGTACCTCAGGAAAAGGGAAGG
TTCTGGGTCCAGGGTGAGCCTCCTGGTGCCCAGGGCCCCTGTCAGAAGGCAGCTCAGCCC
AGGGGAGCCTCCCTCCTCCAGCGGCTCCATAATGGGAAAGCCTCACCGCCCAGAGTGCCC
AGCCCCCCACCTGCGCCTGAACCCCCGTGGCACTGTGGAGACCGAGGGGACAGGGCAGAC
AAGCAGCAGGTTGTGGCTCGAGGTCGGGGGTCTCCATGGAAACGAGGCACCCGGGGGGGC
AACTTGGTGACAGGCACGCAGCGTTTCCAGGAGGCCCTCCAGGACCCCTTCACCCTGTGC
CTTGCCAACGTGCCGGGCCAACCAGACCTCCGCCATATTGTCATCGACGGCAGCAACGTG
GCCATGGTGTGAGTACCTGGTGGGGCTGAGAGTCCTGGGGAAGGGGATGGGATGGTGAAA
CGAGCAGTTTTGTTCACCTTGGGGATATGCGCTGAGCAGGGGTGCAATCCAGCCAGATTG
CCGTGCCCCCACTCTGGGGTCCCAGAGTGCTGACCTCTTCCCACTGCAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCGCCCCTGAGGGGAAGGCCCTGGGGAAGGAGGGGGTACCTCAGGAAAAGGGAAGG
TTCTGGGTCCAGGGTGAGCCTCCTGGTGCCCAGGGCCCCTGTCAGAAGGCAGCTCAGCCC
AGGGGAGCCTCCCTCCTCCAGCGGCTCCATAATGGGAAAGCCTCACCGCCCAGAGTGCCC
AGCCCCCCACCTGCGCCTGAACCCCCGTGGCACTGTGGAGACCGAGGGGACAGGGCAGAC
AAGCAGCAGGTTGTGGCTCGAGGTCGGGGGTCTCCATGGAAACGAGGCACCCGGGGGGGC
AACTTGGTGACAGGCACGCAGCGTTTCCAGGAGGCCCTCCAGGACCCCTTCACCCTGTGC
CTTGCCAACGTGCCGGGCCAACCAGACCTCCGCCATATTGTCATCGACGGCAGCAACGTG
GCCATGGTGTGAGTACCTGGTGGGGCTGAGAGTCCTGGGGAAGGGGATGGGATGGTGAAA
CGAGCAGTTTTGTTCACCTTGGGGATATGCGCTGAGCAGGGGTGCAATCCAGCCAGATTG
CCGTGCCCCCACTCTGGGGTCCCAGAGTGCTGACCTCTTCCCACTGCAGGCA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.998015
               

               
               252-371, - strand, RNAz p=0.714182
               

               
               452-571, + strand, RNAz p=0.843177

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.998015
               

               
               252-371, - strand, RNAz p=0.714182
               

               
               452-571, + strand, RNAz p=0.843177

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               11-106, + strand, RNAmicro p=0.999848
               

               
               12-124, - strand, RNAmicro p=0.999762

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               11-106, + strand, RNAmicro p=0.999848
               

               
               12-124, - strand, RNAmicro p=0.999762

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr10 (11894839-11895436)
               

               
               1-592, gnl|Hg17|chr14 (23971201-23971770)
               

               
               1-592, gnl|Mm7|chr14 (50754525-50755069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr10 (11894839-11895436)
               

               
               1-592, gnl|Hg17|chr14 (23971201-23971770)
               

               
               1-592, gnl|Mm7|chr14 (50754525-50755069)

	1-118, - strand, RNAz p=0.998015
	252-371, - strand, RNAz p=0.714182
	452-571, + strand, RNAz p=0.843177

	11-106, + strand, RNAmicro p=0.999848
	12-124, - strand, RNAmicro p=0.999762

	1-592, gnl\|bosTau2\|chr10 (11894839-11895436)
	1-592, gnl\|Hg17\|chr14 (23971201-23971770)
	1-592, gnl\|Mm7\|chr14 (50754525-50755069)