Non-Coding RNA Search

Tes1-TES01H110055

Sequence:


               
               GCCCGCCTCCTCTACTGTCGGAGCAGCTGAGGCTGGAGAAGGCCAGCCGCGACGAGAACG
CCATGTGCTACCTCAAGCTGGTCTCCCAAGCCGGCCGGCGCCGGGCCCCCCACATCCGGC
AGGCCTTCGAGAAGGTGAACCAGCGCACGTCGGCCACCATCGCCCAGATCGAGCGAAGGC
TCCGCCAGTGTCACCAGCAGCTGCAGGAGGTGGAGGAGGGCTGCAGGCCCAAGGGCTTAG
TGCTGAGAGCAGGGAGCAGCCTGGACGCCTGCGAGCAGCCCAGCACGAAGGCGCTGGTTT
CAGAGCCCCCCCAGCCAGGCGGGGAAGACCGCCTGTCCACCTGCCCGTCCAACATCATCA
CAAGCTTCCCTCGGGATGGTCCCTTCCCAGCCCCGCAGCGGGGGAGGTCCTCCGAGAGCA
CGCGCGTGGCCCAGCGGCAAAGGCTGCTGTGGCGCAAGATGAAGGAAGAGCTGGAGGAGG
TCGGGAAGGTGCACCTGCGCCTCCGGGTGTCCTACGAGAGCCTACGGGAGCAGCACCTGA
CGGACCTGCAGGTGGCACTGGAGGCCCTTCAGGAGGAGAAATGCAGACGAGCGCTGGCGG
AAGGACAGGTGAATGAGCACCTGCAGGGGCACCTGGACGAGATTTACCTCCTCAAACAGA
ATCTGGCCTGCGCCGAAGAGAAGATGGCCTACCTGTCCTACGAGAGAGCCAAGGAGATAT
GGGAGGTCACGGAGACTTTCAAGAGCCGAATCTCCAAGCTTGAGACGCTACAGCAAGTGA
CCCACCTGGAGGTGCCGGGGACCGTCTGGGACCGTCCCCCAGGAGCTCACGTTCTGGTTT
GCGAGCCTGCTGCTCGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCCTCCTCTACTGTCGGAGCAGCTGAGGCTGGAGAAGGCCAGCCGCGACGAGAACG
CCATGTGCTACCTCAAGCTGGTCTCCCAAGCCGGCCGGCGCCGGGCCCCCCACATCCGGC
AGGCCTTCGAGAAGGTGAACCAGCGCACGTCGGCCACCATCGCCCAGATCGAGCGAAGGC
TCCGCCAGTGTCACCAGCAGCTGCAGGAGGTGGAGGAGGGCTGCAGGCCCAAGGGCTTAG
TGCTGAGAGCAGGGAGCAGCCTGGACGCCTGCGAGCAGCCCAGCACGAAGGCGCTGGTTT
CAGAGCCCCCCCAGCCAGGCGGGGAAGACCGCCTGTCCACCTGCCCGTCCAACATCATCA
CAAGCTTCCCTCGGGATGGTCCCTTCCCAGCCCCGCAGCGGGGGAGGTCCTCCGAGAGCA
CGCGCGTGGCCCAGCGGCAAAGGCTGCTGTGGCGCAAGATGAAGGAAGAGCTGGAGGAGG
TCGGGAAGGTGCACCTGCGCCTCCGGGTGTCCTACGAGAGCCTACGGGAGCAGCACCTGA
CGGACCTGCAGGTGGCACTGGAGGCCCTTCAGGAGGAGAAATGCAGACGAGCGCTGGCGG
AAGGACAGGTGAATGAGCACCTGCAGGGGCACCTGGACGAGATTTACCTCCTCAAACAGA
ATCTGGCCTGCGCCGAAGAGAAGATGGCCTACCTGTCCTACGAGAGAGCCAAGGAGATAT
GGGAGGTCACGGAGACTTTCAAGAGCCGAATCTCCAAGCTTGAGACGCTACAGCAAGTGA
CCCACCTGGAGGTGCCGGGGACCGTCTGGGACCGTCCCCCAGGAGCTCACGTTCTGGTTT
GCGAGCCTGCTGCTCGCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57112977|ref|XP_549368.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57112977|ref|XP_549368.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               8-126, - strand, RNAz p=0.888711
               

               
               207-363, - strand, RNAz p=0.999061

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-126, - strand, RNAz p=0.888711
               

               
               207-363, - strand, RNAz p=0.999061

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-591, gnl|bosTau2|chr7 (6521528-6520941)
               

               
               8-591, gnl|Hg17|chrX (153037458-153036877)
               

               
               8-591, gnl|Mm7|chrX (69548167-69547592)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-591, gnl|bosTau2|chr7 (6521528-6520941)
               

               
               8-591, gnl|Hg17|chrX (153037458-153036877)
               

               
               8-591, gnl|Mm7|chrX (69548167-69547592)

	8-126, - strand, RNAz p=0.888711
	207-363, - strand, RNAz p=0.999061

	8-591, gnl\|bosTau2\|chr7 (6521528-6520941)
	8-591, gnl\|Hg17\|chrX (153037458-153036877)
	8-591, gnl\|Mm7\|chrX (69548167-69547592)