Non-Coding RNA Search

Thy1-THY010004D07

Sequence:


               
               TATATTGAGGCTGCAGACATATCCGGCTGTCTGTCTGTTAGGGGGACCTCGGCTCCTAGA
CAAAGGTGATGTCCCGAGGGACACACAGATAACACCCACAAGCAACTTCCGCCTCTCCCC
TCCACCTCCCACTTCTGGAGCAACGTGAGGTCTCCGCCAGGTCAGCAGAGGGTAACGGGC
GGGAGATTTGGGAAACACTGGCCGAGACTCCCTGGGGGTCTGAGGGGCCAAGGGGAAAGC
TGAGCCCTCCTAGGGGAGGGTCCCTGAGTGAGAGAACAGTGGAAGAGGAAGGAAACCGGG
CCCTTTTCTTGGGGAGCTCCCAAGTAGGAGAAAAAGAAAAGGAAGAGGCTTGGACCAGCC
TCCACTAATTACAGGGCCACTGACAGTAATGGCTAACGCGCAGCGACACAGACAGACCCG
TGCCGGGTGCAGCTTCGTGAATCCTCACAGCCCTGGGAGGTGGGTATTATTAATCATCAT
CATCCCATTTTTTAAAATAGACTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATTGAGGCTGCAGACATATCCGGCTGTCTGTCTGTTAGGGGGACCTCGGCTCCTAGA
CAAAGGTGATGTCCCGAGGGACACACAGATAACACCCACAAGCAACTTCCGCCTCTCCCC
TCCACCTCCCACTTCTGGAGCAACGTGAGGTCTCCGCCAGGTCAGCAGAGGGTAACGGGC
GGGAGATTTGGGAAACACTGGCCGAGACTCCCTGGGGGTCTGAGGGGCCAAGGGGAAAGC
TGAGCCCTCCTAGGGGAGGGTCCCTGAGTGAGAGAACAGTGGAAGAGGAAGGAAACCGGG
CCCTTTTCTTGGGGAGCTCCCAAGTAGGAGAAAAAGAAAAGGAAGAGGCTTGGACCAGCC
TCCACTAATTACAGGGCCACTGACAGTAATGGCTAACGCGCAGCGACACAGACAGACCCG
TGCCGGGTGCAGCTTCGTGAATCCTCACAGCCCTGGGAGGTGGGTATTATTAATCATCAT
CATCCCATTTTTTAAAATAGACTATTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               254-410, + strand, RNAz p=0.935388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-410, + strand, RNAz p=0.935388

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-235, gnl|bosTau2|chr7 (9584295-9584069)
               

               
               2-235, gnl|canFam2|chr20 (53854630-53854185)
               

               
               2-235, gnl|echTel1|scaffold_287265 (3298-2843)
               

               
               2-235, gnl|hg17|chr19 (10207916-10208378)
               

               
               2-235, gnl|Hg17|chr19 (10207990-10208205)
               

               
               2-235, gnl|mm7|chr9 (20859810-20860214)
               

               
               2-235, gnl|panTro1|chr20 (10590026-10590488)
               

               
               2-235, gnl|rheMac2|chr19 (10045823-10046280)
               

               
               2-235, gnl|rn3|chr8 (20007728-20008132)
               


               
               254-509, gnl|bosTau2|chr7 (9584015-9583758)
               

               
               254-509, gnl|Hg17|chr19 (10208245-10208472)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-235, gnl|bosTau2|chr7 (9584295-9584069)
               

               
               2-235, gnl|canFam2|chr20 (53854630-53854185)
               

               
               2-235, gnl|echTel1|scaffold_287265 (3298-2843)
               

               
               2-235, gnl|hg17|chr19 (10207916-10208378)
               

               
               2-235, gnl|Hg17|chr19 (10207990-10208205)
               

               
               2-235, gnl|mm7|chr9 (20859810-20860214)
               

               
               2-235, gnl|panTro1|chr20 (10590026-10590488)
               

               
               2-235, gnl|rheMac2|chr19 (10045823-10046280)
               

               
               2-235, gnl|rn3|chr8 (20007728-20008132)
               


               
               254-509, gnl|bosTau2|chr7 (9584015-9583758)
               

               
               254-509, gnl|Hg17|chr19 (10208245-10208472)

	2-235, gnl\|bosTau2\|chr7 (9584295-9584069)
	2-235, gnl\|canFam2\|chr20 (53854630-53854185)
	2-235, gnl\|echTel1\|scaffold_287265 (3298-2843)
	2-235, gnl\|hg17\|chr19 (10207916-10208378)
	2-235, gnl\|Hg17\|chr19 (10207990-10208205)
	2-235, gnl\|mm7\|chr9 (20859810-20860214)
	2-235, gnl\|panTro1\|chr20 (10590026-10590488)
	2-235, gnl\|rheMac2\|chr19 (10045823-10046280)
	2-235, gnl\|rn3\|chr8 (20007728-20008132)

	254-509, gnl\|bosTau2\|chr7 (9584015-9583758)
	254-509, gnl\|Hg17\|chr19 (10208245-10208472)