Non-Coding RNA Search

Thy1-THY010012H08

Sequence:


               
               GGTTTCCAAAGAATTATTAGCATTTGTATCTGTCATGAATCCTCCAAACTGAACAAGACC
CACCAGCCTTTTCTGGGACGGAGAGCTGGGGCTCTTTGCTTGTGTGGGAGCAATATTTAA
GTAAGAAAAAAAAAAAAGAACATTGAAACTACTTTTACTAATGATGTGACAAACGTAGCA
AGTAGTTACATGCTAATTCAGGCTCTCACCTTTAATTAGGACCTGGGGAAGCTGAGTTCT
GCTGTCTTCAATCTTTGGAAATAAGCACTCATGATCAAAGAGCTACCCTCTTTAAATAAT
TTAAATAGGTATCCATTTTAATTAAAGTCGATATTGAATATTGGATAGGAAGATGACTGA
TTCTTCTTTATTTTTTAACCTTTAGATTTGGTGACTGGCTCTTGATTGAATAGGGTCCTT
GTACAGAAGGCAAAAGCATCTGGCTTAGTCCCTCTTCAGGGCTGGAGATCAAGCACACAG
TTGGTTGGAGGCCTTCTGTGATCCTAACACCTCCCTGGGATAGAGCAGGTGGGAGGAAGC
CTCTTTCAGAGGCTCCTGGTGGGTTACCATACAGGTCTCAACAGCTGCCTGAAGACAAAC
CAGTCTGGTTCTGCTCTTCTGAGAGGAAAATATATGTCTCCCTGGCCCAACACAAGGGTG
GTTTGGAATGCAGCAAAGCATTTGATGAATCATTAGCCATATCCTCAAAATTTCACAAAA
AGGTCCCTGCTGAAAAGAGAAGGTATTCAGCCTGTACAGGGACCTGAATGTAGCCCACGG
ATACCATCATAAGCAGTAAGCCTCCATTCCTCTGCCTTTTAAAGGTGAGTAAATATGCTC
ACAAGGAGTCTGTCAAAGAACCGTTAGGCTGTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTCCAAAGAATTATTAGCATTTGTATCTGTCATGAATCCTCCAAACTGAACAAGACC
CACCAGCCTTTTCTGGGACGGAGAGCTGGGGCTCTTTGCTTGTGTGGGAGCAATATTTAA
GTAAGAAAAAAAAAAAAGAACATTGAAACTACTTTTACTAATGATGTGACAAACGTAGCA
AGTAGTTACATGCTAATTCAGGCTCTCACCTTTAATTAGGACCTGGGGAAGCTGAGTTCT
GCTGTCTTCAATCTTTGGAAATAAGCACTCATGATCAAAGAGCTACCCTCTTTAAATAAT
TTAAATAGGTATCCATTTTAATTAAAGTCGATATTGAATATTGGATAGGAAGATGACTGA
TTCTTCTTTATTTTTTAACCTTTAGATTTGGTGACTGGCTCTTGATTGAATAGGGTCCTT
GTACAGAAGGCAAAAGCATCTGGCTTAGTCCCTCTTCAGGGCTGGAGATCAAGCACACAG
TTGGTTGGAGGCCTTCTGTGATCCTAACACCTCCCTGGGATAGAGCAGGTGGGAGGAAGC
CTCTTTCAGAGGCTCCTGGTGGGTTACCATACAGGTCTCAACAGCTGCCTGAAGACAAAC
CAGTCTGGTTCTGCTCTTCTGAGAGGAAAATATATGTCTCCCTGGCCCAACACAAGGGTG
GTTTGGAATGCAGCAAAGCATTTGATGAATCATTAGCCATATCCTCAAAATTTCACAAAA
AGGTCCCTGCTGAAAAGAGAAGGTATTCAGCCTGTACAGGGACCTGAATGTAGCCCACGG
ATACCATCATAAGCAGTAAGCCTCCATTCCTCTGCCTTTTAAAGGTGAGTAAATATGCTC
ACAAGGAGTCTGTCAAAGAACCGTTAGGCTGTAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               528-647, - strand, RNAz p=0.85598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-647, - strand, RNAz p=0.85598

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-876, gnl|bosTau2|chr7 (68946903-68946052)
               

               
               2-876, gnl|Hg17|chr5 (109749025-109750833)
               

               
               2-876, gnl|Mm7|chr17 (63408024-63408807)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-876, gnl|bosTau2|chr7 (68946903-68946052)
               

               
               2-876, gnl|Hg17|chr5 (109749025-109750833)
               

               
               2-876, gnl|Mm7|chr17 (63408024-63408807)

	2-876, gnl\|bosTau2\|chr7 (68946903-68946052)
	2-876, gnl\|Hg17\|chr5 (109749025-109750833)
	2-876, gnl\|Mm7\|chr17 (63408024-63408807)