Non-Coding RNA Search

Thy1-THY010016D07

Sequence:


               
               AATTAACCGATGCTTCTACATTCATTGGCTACCGTCACCTTACCTTTAGTCTGTGGGTGT
TTGTGTTGAGACCCCACACTGGATTCTGAACTTTTTAAAAGCTCAGAGCTGTGTCATTTA
TTTCTGGAGCCCCCATGCCTGGCTTACTGTTGGGAAGAGTAGTTGCTTAATAGATATCTA
TTGATTGGACAGAATTCATGGCAAAATCAATATGTCTATTCTTCTTGAATAGCAATTTAA
AAAAATCACAAGCACTAACCTACCCCATGATTTTGGATAAGTCCATTTTACCACTTTAGC
TTTAAGTGGTAGATTTAAAGTGCTGTAAAGTGAAGGGATGCTTCCGAGAGCCTTACTTGT
TCTAAGATACCGAGATTCGACTTAACTTGTGTGACTGTCCTGTCATGATAACATGGGTCG
GCTCTTGGCTCACCAATGGAATGAAGGGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAACCGATGCTTCTACATTCATTGGCTACCGTCACCTTACCTTTAGTCTGTGGGTGT
TTGTGTTGAGACCCCACACTGGATTCTGAACTTTTTAAAAGCTCAGAGCTGTGTCATTTA
TTTCTGGAGCCCCCATGCCTGGCTTACTGTTGGGAAGAGTAGTTGCTTAATAGATATCTA
TTGATTGGACAGAATTCATGGCAAAATCAATATGTCTATTCTTCTTGAATAGCAATTTAA
AAAAATCACAAGCACTAACCTACCCCATGATTTTGGATAAGTCCATTTTACCACTTTAGC
TTTAAGTGGTAGATTTAAAGTGCTGTAAAGTGAAGGGATGCTTCCGAGAGCCTTACTTGT
TCTAAGATACCGAGATTCGACTTAACTTGTGTGACTGTCCTGTCATGATAACATGGGTCG
GCTCTTGGCTCACCAATGGAATGAAGGGATGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-109, - strand, RNAz p=0.578305
               

               
               150-266, + strand, RNAz p=0.812413

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-109, - strand, RNAz p=0.578305
               

               
               150-266, + strand, RNAz p=0.812413

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-297, gnl|bosTau2|chr21 (11802915-11803214)
               

               
               1-297, gnl|Hg17|chr15 (88358070-88358359)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr21 (11802915-11803214)
               

               
               1-297, gnl|Hg17|chr15 (88358070-88358359)

	1-109, - strand, RNAz p=0.578305
	150-266, + strand, RNAz p=0.812413

	1-297, gnl\|bosTau2\|chr21 (11802915-11803214)
	1-297, gnl\|Hg17\|chr15 (88358070-88358359)