Non-Coding RNA Search

Thy1-THY010021H05

Sequence:


               
               TACTGGATCGAGAGAAGCCCCTGGGCCTGGCCCAGGCCGAGACCCGCCCCCCTCTGCCCT
CTGGCTGCCCTGCATTATTCTCAAGGACTTCCTCGATCTTGAGTCTCCTGTTTGCAGAGA
CAGGGAGAACCCCTCTGTGACCTATTCCCCTAGCCCCCCATCCGTCTGCCTCTCCCCTCC
TCAGGGTGTCTCAGATTCTCGGACTTGGGTTTCAAGAGGCACAATAGTTACATTCTCCAG
CTCTGATTGCTGCAGGCCAAGCCTCTGGCTCCCCTTGAGATTGGGTTTCTTGTGCCCTGG
AGGCTCCTGAATTGCATAGAAAGTGGGGGTAAGGGGGAGGCGGTGTGCTGCCCTGGGTAG
GGCCAGGAATCAGCTCCTGAATTGGCCCTTCAAAAGATGGCACCCCCAGAACAGAGCACA
GACCAACCTGCTTCTTGTACCCCAGGCCCTGGGAGGGCTGAAGGAGGGGAAGGGCTGGTG
CACCCCAAGAACTGGCCTCTCCAGCCCTCAAACGCTAATGGTCTGGACCCAGCTGAAGGG
GGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGGATCGAGAGAAGCCCCTGGGCCTGGCCCAGGCCGAGACCCGCCCCCCTCTGCCCT
CTGGCTGCCCTGCATTATTCTCAAGGACTTCCTCGATCTTGAGTCTCCTGTTTGCAGAGA
CAGGGAGAACCCCTCTGTGACCTATTCCCCTAGCCCCCCATCCGTCTGCCTCTCCCCTCC
TCAGGGTGTCTCAGATTCTCGGACTTGGGTTTCAAGAGGCACAATAGTTACATTCTCCAG
CTCTGATTGCTGCAGGCCAAGCCTCTGGCTCCCCTTGAGATTGGGTTTCTTGTGCCCTGG
AGGCTCCTGAATTGCATAGAAAGTGGGGGTAAGGGGGAGGCGGTGTGCTGCCCTGGGTAG
GGCCAGGAATCAGCTCCTGAATTGGCCCTTCAAAAGATGGCACCCCCAGAACAGAGCACA
GACCAACCTGCTTCTTGTACCCCAGGCCCTGGGAGGGCTGAAGGAGGGGAAGGGCTGGTG
CACCCCAAGAACTGGCCTCTCCAGCCCTCAAACGCTAATGGTCTGGACCCAGCTGAAGGG
GGTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               124-243, - strand, RNAz p=0.805304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-243, - strand, RNAz p=0.805304

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               12-347, gnl|bosTau2|chr7 (9270666-9270995)
               

               
               12-347, gnl|canFam2|chr20 (52144798-52144455)
               

               
               12-347, gnl|echTel1|scaffold_297175 (2450-2784)
               

               
               12-347, gnl|hg17|chr19 (13038599-13038941)
               

               
               12-347, gnl|Hg17|chr19 (13038641-13038950)
               

               
               12-347, gnl|loxAfr1|scaffold_24139 (17260-16933)
               

               
               12-347, gnl|mm7|chr8 (83319500-83319168)
               

               
               12-347, gnl|Mm7|chr8 (83319459-83319155)
               

               
               12-347, gnl|monDom2|scaffold_159 (258547-258887)
               

               
               12-347, gnl|oryCun1|scaffold_199951 (322-4)
               

               
               12-347, gnl|panTro1|chr20 (13646863-13647210)
               

               
               12-347, gnl|rheMac2|chr19 (12741033-12741376)
               

               
               12-347, gnl|rn3|chr19 (25091093-25091414)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-347, gnl|bosTau2|chr7 (9270666-9270995)
               

               
               12-347, gnl|canFam2|chr20 (52144798-52144455)
               

               
               12-347, gnl|echTel1|scaffold_297175 (2450-2784)
               

               
               12-347, gnl|hg17|chr19 (13038599-13038941)
               

               
               12-347, gnl|Hg17|chr19 (13038641-13038950)
               

               
               12-347, gnl|loxAfr1|scaffold_24139 (17260-16933)
               

               
               12-347, gnl|mm7|chr8 (83319500-83319168)
               

               
               12-347, gnl|Mm7|chr8 (83319459-83319155)
               

               
               12-347, gnl|monDom2|scaffold_159 (258547-258887)
               

               
               12-347, gnl|oryCun1|scaffold_199951 (322-4)
               

               
               12-347, gnl|panTro1|chr20 (13646863-13647210)
               

               
               12-347, gnl|rheMac2|chr19 (12741033-12741376)
               

               
               12-347, gnl|rn3|chr19 (25091093-25091414)

	12-347, gnl\|bosTau2\|chr7 (9270666-9270995)
	12-347, gnl\|canFam2\|chr20 (52144798-52144455)
	12-347, gnl\|echTel1\|scaffold_297175 (2450-2784)
	12-347, gnl\|hg17\|chr19 (13038599-13038941)
	12-347, gnl\|Hg17\|chr19 (13038641-13038950)
	12-347, gnl\|loxAfr1\|scaffold_24139 (17260-16933)
	12-347, gnl\|mm7\|chr8 (83319500-83319168)
	12-347, gnl\|Mm7\|chr8 (83319459-83319155)
	12-347, gnl\|monDom2\|scaffold_159 (258547-258887)
	12-347, gnl\|oryCun1\|scaffold_199951 (322-4)
	12-347, gnl\|panTro1\|chr20 (13646863-13647210)
	12-347, gnl\|rheMac2\|chr19 (12741033-12741376)
	12-347, gnl\|rn3\|chr19 (25091093-25091414)