Non-Coding RNA Search

Thy1-THY010029C06

Sequence:


               
               TATCTTGTGGGAGGAAAACGACCCTTGTTTGCGTGTGTCTGGCCCGTGTTTAAGATAGCA
TCACCTTGTCCACACTCTGTGTTTATTGGGTTTTGAGGGCAAAGCAGATGAACCGGTTTC
TGTGGCCACATGACAGGTGACTGGAGCTCAGGGCATTTTGCTCCTGAGCACTGTGGCAGT
GACAAGGCCAAGGGAAGGATCACCTGTGGGCTTTGCCCCATGATGTGTCCCCCTAAGGAT
CCAGTGGCCCCACTCCCTACTGCCCCCCCCCCCAGTGGCAGCTGTCACAGTGGGTGTGGG
CTGTATCCCTTACACTGCCAGTTCAGCAGGCTGCCAGGACTGCACCTGTCCTGCTGCCCA
GCATGGCCCCGAGGCAGGCACACAGCGCTGAGAAGGGCCTCTCTCCTACTGGCTCCAGGC
CGCCCTCTTTCTTTGGTCTCCCTAAGAGGGTTCAAGAAGTATTTGTGCCTTTGGTTCATG
TGTTTTCCCATTTGGGAGCTGCTGGGGGCCCTACACCAGCCCAGGGACTGAGGCTCTGGC
ACTGGTCTGTGCAGCTATCCTCTGTCCCAGCCCGCTGCTCCCTCAGCACAGAGGTCAGGT
CCCCCCTCCTGGGCCTAGGCCTGGCTTCCCATCCTCCTGCTTAAAGGGTAGTCACTCTGC
TTGGGGATTTGAAGGTCAGTGGAGATGGAAAGCCCCCTGAGAGTTAGAAGTCAGCTCCTT
ACAGTGTCCTTGTTATGGTGTGTGGGCAGAGCAGTCCCCACAGATGCCACTTCCTAGTTT
TGGGAACTTGTGACTGTATTAGTTCATGAGGCAAAGGAGATGAAAGTTGCAGATGGAGGA
GTTCTCATTGTGGCTCAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTTGTGGGAGGAAAACGACCCTTGTTTGCGTGTGTCTGGCCCGTGTTTAAGATAGCA
TCACCTTGTCCACACTCTGTGTTTATTGGGTTTTGAGGGCAAAGCAGATGAACCGGTTTC
TGTGGCCACATGACAGGTGACTGGAGCTCAGGGCATTTTGCTCCTGAGCACTGTGGCAGT
GACAAGGCCAAGGGAAGGATCACCTGTGGGCTTTGCCCCATGATGTGTCCCCCTAAGGAT
CCAGTGGCCCCACTCCCTACTGCCCCCCCCCCCAGTGGCAGCTGTCACAGTGGGTGTGGG
CTGTATCCCTTACACTGCCAGTTCAGCAGGCTGCCAGGACTGCACCTGTCCTGCTGCCCA
GCATGGCCCCGAGGCAGGCACACAGCGCTGAGAAGGGCCTCTCTCCTACTGGCTCCAGGC
CGCCCTCTTTCTTTGGTCTCCCTAAGAGGGTTCAAGAAGTATTTGTGCCTTTGGTTCATG
TGTTTTCCCATTTGGGAGCTGCTGGGGGCCCTACACCAGCCCAGGGACTGAGGCTCTGGC
ACTGGTCTGTGCAGCTATCCTCTGTCCCAGCCCGCTGCTCCCTCAGCACAGAGGTCAGGT
CCCCCCTCCTGGGCCTAGGCCTGGCTTCCCATCCTCCTGCTTAAAGGGTAGTCACTCTGC
TTGGGGATTTGAAGGTCAGTGGAGATGGAAAGCCCCCTGAGAGTTAGAAGTCAGCTCCTT
ACAGTGTCCTTGTTATGGTGTGTGGGCAGAGCAGTCCCCACAGATGCCACTTCCTAGTTT
TGGGAACTTGTGACTGTATTAGTTCATGAGGCAAAGGAGATGAAAGTTGCAGATGGAGGA
GTTCTCATTGTGGCTCAGTGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               83-241, + strand, RNAz p=0.90251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-241, + strand, RNAz p=0.90251

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               26-112, + strand, RNAmicro p=0.960697

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               26-112, + strand, RNAmicro p=0.960697

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               5-391, gnl|bosTau2|chr19 (47157305-47156906)
               

               
               5-391, gnl|Hg17|chr17 (75619408-75619008)
               

               
               5-391, gnl|Mm7|chr11 (119332254-119331893)
               


               
               508-837, gnl|bosTau2|chr19 (47156551-47156215)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-391, gnl|bosTau2|chr19 (47157305-47156906)
               

               
               5-391, gnl|Hg17|chr17 (75619408-75619008)
               

               
               5-391, gnl|Mm7|chr11 (119332254-119331893)
               


               
               508-837, gnl|bosTau2|chr19 (47156551-47156215)

	5-391, gnl\|bosTau2\|chr19 (47157305-47156906)
	5-391, gnl\|Hg17\|chr17 (75619408-75619008)
	5-391, gnl\|Mm7\|chr11 (119332254-119331893)

	508-837, gnl\|bosTau2\|chr19 (47156551-47156215)