Non-Coding RNA Search

Thy1-THY010031D10

Sequence:


               
               TTCAGCGTCTCAGCATTCTTCAGTGTTTTAAGCAAACAGACGTGGTTACCCCGGGGGTGG
GGTGCGGGAACAGGGGCACTGCCGTCGGGAGAGGTCACGAGACTCACCGGTGCTGTGATC
ACTGCAGAGTCGCTGAGGTGGAGCCCTTGGTGCTGGCCGTTAGGTTGTGGCTGAAAAGGG
AGAGAAGATCAGTATGTAGCCAAGGGCTGACAGTAGATTTTTTCAAAGCTGCTTCCTAAA
AGGGCTAAACAGACGGTTGGTGTAGATCTTGCTCAGCACCTGGCCTCTGGCCCGGGCGCA
CACGTGCACAGCACTAGTGGACGTGAGCACCTGTCTATCAGCTGTCCCGACTGCCCGCCT
GTAGCAGCTTGACCGTGTACCTCTTTGTCCTCAGTCTGTGTCCTGGAAGTTCCACAGCCA
CGGGACATTCTTGAACCGTCCTTTTCAAGGTTAAAGAAACCAAACCATGCCATCATTTTC
ACAGACTGTACTAAGAAACATATCCCAGGTGGTTGATGCTTTAGAATGTACTGTATATAT
TTCCTGTTGTTTCCGCTATTTTATGGAAGAATCATTTATTTTGTACTGGATCCCATTTGT
ACAGTTCAAGGGTAAAGTTAATGGGAAAAAATTAAAGTGTTATAAAGGAAAGCCCCTTGA
GTAACTAGATTCGTGAAGTTCATCCTCTGCTTTTGAAGAACCATTAAGACTGCAAAGGAC
CGAAGTGCCTGATAACGTTGTGTGTCTGCTCTTTGCTCCAGTTAGTTTTGATTATTTTGC
TTTGGTTGAAAGTCAGCGTTGCAGGAATGAAACTGGGCCTAAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGCGTCTCAGCATTCTTCAGTGTTTTAAGCAAACAGACGTGGTTACCCCGGGGGTGG
GGTGCGGGAACAGGGGCACTGCCGTCGGGAGAGGTCACGAGACTCACCGGTGCTGTGATC
ACTGCAGAGTCGCTGAGGTGGAGCCCTTGGTGCTGGCCGTTAGGTTGTGGCTGAAAAGGG
AGAGAAGATCAGTATGTAGCCAAGGGCTGACAGTAGATTTTTTCAAAGCTGCTTCCTAAA
AGGGCTAAACAGACGGTTGGTGTAGATCTTGCTCAGCACCTGGCCTCTGGCCCGGGCGCA
CACGTGCACAGCACTAGTGGACGTGAGCACCTGTCTATCAGCTGTCCCGACTGCCCGCCT
GTAGCAGCTTGACCGTGTACCTCTTTGTCCTCAGTCTGTGTCCTGGAAGTTCCACAGCCA
CGGGACATTCTTGAACCGTCCTTTTCAAGGTTAAAGAAACCAAACCATGCCATCATTTTC
ACAGACTGTACTAAGAAACATATCCCAGGTGGTTGATGCTTTAGAATGTACTGTATATAT
TTCCTGTTGTTTCCGCTATTTTATGGAAGAATCATTTATTTTGTACTGGATCCCATTTGT
ACAGTTCAAGGGTAAAGTTAATGGGAAAAAATTAAAGTGTTATAAAGGAAAGCCCCTTGA
GTAACTAGATTCGTGAAGTTCATCCTCTGCTTTTGAAGAACCATTAAGACTGCAAAGGAC
CGAAGTGCCTGATAACGTTGTGTGTCTGCTCTTTGCTCCAGTTAGTTTTGATTATTTTGC
TTTGGTTGAAAGTCAGCGTTGCAGGAATGAAACTGGGCCTAAATGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               392-500, + strand, RNAz p=0.960136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-500, + strand, RNAz p=0.960136

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               314-827, gnl|bosTau2|chr16 (40172360-40171863)
               

               
               314-827, gnl|Hg17|chr1 (13856000-13856546)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               314-827, gnl|bosTau2|chr16 (40172360-40171863)
               

               
               314-827, gnl|Hg17|chr1 (13856000-13856546)

	314-827, gnl\|bosTau2\|chr16 (40172360-40171863)
	314-827, gnl\|Hg17\|chr1 (13856000-13856546)