Non-Coding RNA Search

Thy1-THY010031H02

Sequence:


               
               CCAGGTCCAGCAAGGCCTCCCCACCCCTCTGGGGCCCAGTCAGAGGGAGGAAGGAAGGAA
GCCATGCAAGATAGGATTTCCCCACCCCAAGGCCTGCAATCTTCCTGGCCCTAGTCACCT
GATAAGCAAGCTGGTTTGTAGCTGACCTGTGTAGTTTTACACCGGTAACAAAAGCCACTG
GGAAGTTACAAAAATCCTCCTGCACAGGTAGGCTTTAAGCGGCCATACTTGTTCAACAAG
GGTGTGAAGGGGGGGAGTGAAAGAGCCCCAGACCGTCTGTAGGGGCGACTCTCTTCAGGG
CCTGCTGGCTCGGCCCAGCGGCACAGAAGTTCCCCAGCTCTCCTCCCCTTTCTTCTGGGC
CTTGGGGCGCTTTGACGTCTGCCCCTCCCTCCCAGCTGGTCTTGACTCACACGTTCCCTG
GGTGAGCCACCTATCCTCTGGCCCCCTTCCACCGACTCCGCCCAGGTCCCTGGGACACCC
CGGGTGAGGAGTCGCTGGGAAGGCAGGCTGTGGGTGCAGGCCCGGGGCCTCCCCGCTCTG
TGCGGGGGCTCGTGAGGGCTCTGCAGGCCAGGGTGAGGGGGGAGAGGGGCACAGGGAGTG
GTAGACAACCGAGACCCGCTTCCCCTCAGAGCTCCAGGGGGCTCTTTTGGTTCCTGGGAG
GGTTGGAAGCCGCTTGCTTCCTGATGCCATCTTGTGTGCTCCTCCAGCAAGACAAGGTGC
TCATCAGGGCAGCAGTTATCCTGAGGGCCCGGGACCAGCCTTCGTGTGTCATGGGAAAGC
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTCCAGCAAGGCCTCCCCACCCCTCTGGGGCCCAGTCAGAGGGAGGAAGGAAGGAA
GCCATGCAAGATAGGATTTCCCCACCCCAAGGCCTGCAATCTTCCTGGCCCTAGTCACCT
GATAAGCAAGCTGGTTTGTAGCTGACCTGTGTAGTTTTACACCGGTAACAAAAGCCACTG
GGAAGTTACAAAAATCCTCCTGCACAGGTAGGCTTTAAGCGGCCATACTTGTTCAACAAG
GGTGTGAAGGGGGGGAGTGAAAGAGCCCCAGACCGTCTGTAGGGGCGACTCTCTTCAGGG
CCTGCTGGCTCGGCCCAGCGGCACAGAAGTTCCCCAGCTCTCCTCCCCTTTCTTCTGGGC
CTTGGGGCGCTTTGACGTCTGCCCCTCCCTCCCAGCTGGTCTTGACTCACACGTTCCCTG
GGTGAGCCACCTATCCTCTGGCCCCCTTCCACCGACTCCGCCCAGGTCCCTGGGACACCC
CGGGTGAGGAGTCGCTGGGAAGGCAGGCTGTGGGTGCAGGCCCGGGGCCTCCCCGCTCTG
TGCGGGGGCTCGTGAGGGCTCTGCAGGCCAGGGTGAGGGGGGAGAGGGGCACAGGGAGTG
GTAGACAACCGAGACCCGCTTCCCCTCAGAGCTCCAGGGGGCTCTTTTGGTTCCTGGGAG
GGTTGGAAGCCGCTTGCTTCCTGATGCCATCTTGTGTGCTCCTCCAGCAAGACAAGGTGC
TCATCAGGGCAGCAGTTATCCTGAGGGCCCGGGACCAGCCTTCGTGTGTCATGGGAAAGC
A

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-214, - strand, RNAz p=0.746063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-214, - strand, RNAz p=0.746063

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               108-220, - strand, RNAmicro p=0.999851

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               108-220, - strand, RNAmicro p=0.999851

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-318, gnl|bosTau2|chr21 (30083148-30082835)
               

               
               1-318, gnl|Hg17|chr14 (34874608-34873627)
               

               
               1-318, gnl|Mm7|chr12 (53363427-53363133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr21 (30083148-30082835)
               

               
               1-318, gnl|Hg17|chr14 (34874608-34873627)
               

               
               1-318, gnl|Mm7|chr12 (53363427-53363133)

	1-318, gnl\|bosTau2\|chr21 (30083148-30082835)
	1-318, gnl\|Hg17\|chr14 (34874608-34873627)
	1-318, gnl\|Mm7\|chr12 (53363427-53363133)