Non-Coding RNA Search

Thy1-THY010032C11

Sequence:


               
               AAAACTTTCAGCAGCATATATTGAATATTCTTAACAAACTTATTTTGGATCAGTTAGGAG
GAGCTGAGATATCACAACAAATTAAGAAAGCGGCTTGCAATATTTGTACCATTGACTCAG
ATCAGCTAGCCAAATTAGAAGAGACCCTGCAGGGAAACTCACATGATGCTGACCCTTCCT
CCAGTTTGTCTAGTCCTTCTTACAGATCTCAAGGGATCCTGCCCAGCAATGGATCTGAAG
ACTTTTTGTGGAAATGGGATGCCTTAGAGGCTTATCAGAATTTTGTTTTTGAAGAAGACA
GATTACATAGTGTCCAAATTGCAAATCACATTTGTGGTTTAATTCAGAAAGGCAATGTAG
TTGTTCAGTGGAAATTGTATAACTACATATTTAATCCTGTGCTCCAAAGAGGAGTTCAGT
TAGCACATCATTGTCAACAGCTTAGTGTTACTTCAGCTCAAACTCATGTCTGTAACCTTC
ATAACCAGTGTTTGCCCCAGGAAGTGCTTCAAATTTATTTAAAAACTCTGCCTACCCTGC
TTAAATCAAGGTCTGTATGTGTGTGTGTGTATAGCTATTTTTTTTTCTCATTGTTTGCTT
TTGAATGTCTTTGTATTTTCCTAGGATTTAATTTTAGTTTAACAACAACAAAAAATTCCC
ATCCCATGTCAGATTTTTTTAAAAAAACATTTGTTTGTTTCTACTGGAATGGTTGTAGAG
AAGGGGATAGAGCCATTTCTTTTAATTTCTCTGAAGAAAGGTAAAGTTTTAAATATATTT
CTGAGAAAAAAATGGACGTAACATAAATATTCAACAGCAGGGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACTTTCAGCAGCATATATTGAATATTCTTAACAAACTTATTTTGGATCAGTTAGGAG
GAGCTGAGATATCACAACAAATTAAGAAAGCGGCTTGCAATATTTGTACCATTGACTCAG
ATCAGCTAGCCAAATTAGAAGAGACCCTGCAGGGAAACTCACATGATGCTGACCCTTCCT
CCAGTTTGTCTAGTCCTTCTTACAGATCTCAAGGGATCCTGCCCAGCAATGGATCTGAAG
ACTTTTTGTGGAAATGGGATGCCTTAGAGGCTTATCAGAATTTTGTTTTTGAAGAAGACA
GATTACATAGTGTCCAAATTGCAAATCACATTTGTGGTTTAATTCAGAAAGGCAATGTAG
TTGTTCAGTGGAAATTGTATAACTACATATTTAATCCTGTGCTCCAAAGAGGAGTTCAGT
TAGCACATCATTGTCAACAGCTTAGTGTTACTTCAGCTCAAACTCATGTCTGTAACCTTC
ATAACCAGTGTTTGCCCCAGGAAGTGCTTCAAATTTATTTAAAAACTCTGCCTACCCTGC
TTAAATCAAGGTCTGTATGTGTGTGTGTGTATAGCTATTTTTTTTTCTCATTGTTTGCTT
TTGAATGTCTTTGTATTTTCCTAGGATTTAATTTTAGTTTAACAACAACAAAAAATTCCC
ATCCCATGTCAGATTTTTTTAAAAAAACATTTGTTTGTTTCTACTGGAATGGTTGTAGAG
AAGGGGATAGAGCCATTTCTTTTAATTTCTCTGAAGAAAGGTAAAGTTTTAAATATATTT
CTGAGAAAAAAATGGACGTAACATAAATATTCAACAGCAGGGGCAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-439, + strand, RNAz p=0.954211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-439, + strand, RNAz p=0.954211

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-826, gnl|bosTau2|chr28 (3906605-3905758)
               

               
               1-826, gnl|Hg17|chr1 (232298345-232297416)
               

               
               1-826, gnl|Mm7|chr13 (12978334-12979355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr28 (3906605-3905758)
               

               
               1-826, gnl|Hg17|chr1 (232298345-232297416)
               

               
               1-826, gnl|Mm7|chr13 (12978334-12979355)

	1-826, gnl\|bosTau2\|chr28 (3906605-3905758)
	1-826, gnl\|Hg17\|chr1 (232298345-232297416)
	1-826, gnl\|Mm7\|chr13 (12978334-12979355)