Non-Coding RNA Search

Thy1-THY010034B01

Sequence:


               
               ATCCGGATGAAGGGGTTGCCCTGCCCGTGCCCAGCCCTGCCCCACTTCTGGCAGCTGGGG
TCTCACTTCATGGCCGAGGGCTCCGGGACCCAGGCCCCCGGCAAAGGGCCCCTGCTCAGT
GTCCAGCTCCTGCGAGCCCAGTATGAAGGCCTGAGACGGCAGCAGAAGGCTCAGGCCCAC
GTGGTGGTGCTCCCGAAAGGAGGGAACATCCCTGCTCCTGCTGAGTCCGTGGTCAGTGCC
GTGTGGATTAACAAGGAGAGGAGGCACTCACTATCCCTGGAAGAGGCAGACTCGGAGCCA
GAGGGGATGCTAGAGGAGGCCGACAGAGGCAGTCTCTGGACCTCTGAATCTCCATGGCAC
ACACACCTAGAGATGTACCGCCTGGTCCAAACCTTCCGCCAGGAAACCAGTCATCAAGTA
AAGCACAAGGATAAGTTTGTGGGGCCTGAGCAAAGGCTCCCTCAGGAAGGAGACACGGGC
TTGTCTGAAGACAGTCAGATGACTCAGCAAGGGATCAGGATGCCAGAGGCAGCCCAGCCT
GAAGGTCAGGTGGGTGATACCCAAACAGAGGCGAGGGGATCCAGCTTAAACATTGGCACT
CAGCGCCCCCTTTCCATAAAGAACCCACATAGGTCTGGAAAACCAGCTCACTATCCATTT
CCCCGGAAGAAAACTCCCAGGATCTCCCAAGCAGCCCGGAATCTGGGCTTATATGGCCCA
GCCTGAAGCTTTCTCCTCAAAAATCTCAACCTTGAGGCTGTCTACACCCTCTTCGAAGCA
TCCCGGGGTCAGAGACACCAGAGCCTCTAGCTGACTGCAGAACTAGATTAAATCAATTGA
GTGGGAAATGAACTTAACAGTGCACACATGGTCCTGTCATTAAAAATAAAGAGAGTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCGGATGAAGGGGTTGCCCTGCCCGTGCCCAGCCCTGCCCCACTTCTGGCAGCTGGGG
TCTCACTTCATGGCCGAGGGCTCCGGGACCCAGGCCCCCGGCAAAGGGCCCCTGCTCAGT
GTCCAGCTCCTGCGAGCCCAGTATGAAGGCCTGAGACGGCAGCAGAAGGCTCAGGCCCAC
GTGGTGGTGCTCCCGAAAGGAGGGAACATCCCTGCTCCTGCTGAGTCCGTGGTCAGTGCC
GTGTGGATTAACAAGGAGAGGAGGCACTCACTATCCCTGGAAGAGGCAGACTCGGAGCCA
GAGGGGATGCTAGAGGAGGCCGACAGAGGCAGTCTCTGGACCTCTGAATCTCCATGGCAC
ACACACCTAGAGATGTACCGCCTGGTCCAAACCTTCCGCCAGGAAACCAGTCATCAAGTA
AAGCACAAGGATAAGTTTGTGGGGCCTGAGCAAAGGCTCCCTCAGGAAGGAGACACGGGC
TTGTCTGAAGACAGTCAGATGACTCAGCAAGGGATCAGGATGCCAGAGGCAGCCCAGCCT
GAAGGTCAGGTGGGTGATACCCAAACAGAGGCGAGGGGATCCAGCTTAAACATTGGCACT
CAGCGCCCCCTTTCCATAAAGAACCCACATAGGTCTGGAAAACCAGCTCACTATCCATTT
CCCCGGAAGAAAACTCCCAGGATCTCCCAAGCAGCCCGGAATCTGGGCTTATATGGCCCA
GCCTGAAGCTTTCTCCTCAAAAATCTCAACCTTGAGGCTGTCTACACCCTCTTCGAAGCA
TCCCGGGGTCAGAGACACCAGAGCCTCTAGCTGACTGCAGAACTAGATTAAATCAATTGA
GTGGGAAATGAACTTAACAGTGCACACATGGTCCTGTCATTAAAAATAAAGAGAGTGGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61175273|ref|NP_001013011.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61175273|ref|NP_001013011.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               237-356, - strand, RNAz p=0.656848
               

               
               397-516, - strand, RNAz p=0.538065
               

               
               597-716, - strand, RNAz p=0.626906

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-356, - strand, RNAz p=0.656848
               

               
               397-516, - strand, RNAz p=0.538065
               

               
               597-716, - strand, RNAz p=0.626906

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               198-892, gnl|bosTau2|chr8 (53469962-53470654)
               

               
               198-892, gnl|Hg17|chr9 (110043311-110042608)
               

               
               198-892, gnl|Mm7|chr4 (57952002-57951326)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-892, gnl|bosTau2|chr8 (53469962-53470654)
               

               
               198-892, gnl|Hg17|chr9 (110043311-110042608)
               

               
               198-892, gnl|Mm7|chr4 (57952002-57951326)

	237-356, - strand, RNAz p=0.656848
	397-516, - strand, RNAz p=0.538065
	597-716, - strand, RNAz p=0.626906

	198-892, gnl\|bosTau2\|chr8 (53469962-53470654)
	198-892, gnl\|Hg17\|chr9 (110043311-110042608)
	198-892, gnl\|Mm7\|chr4 (57952002-57951326)