Non-Coding RNA Search

Thy1-THY010034B04

Sequence:


               
               TATCACTCTCTCGGCAGGGAGGTGCAGGCGGAGACTCAGAGGAAGTGAGGTTTGTGGTTG
GAATCCACTTCCCTTGGCTTTGCCAGGGGCGGGGCATTGGCCTTAGCAATGTCAGAGGAA
CAGCCTCTCTCCTCTACCCTGGGGAATGTGGGCCTGGATGCGGACAACTTGGAGAAGCAG
CTCAAGGGGGCAGGGCCAAAGAGATGGGTGGCCAGACTGTGCTGGGCTGACGCCTCAGTC
TAGCCTGGCCCACCCAGCTCTGGGCAGCACAGCAGGCTGCCCTACCTCTGAGCTCAGTTT
CTCCTGCTTTGACCTCACAAGGTGGAGACTGGGGGATGAAAGCACCTGGTAAAGCCAGGT
GGCCTTGGTGTTACTGGCTGAAGAGGTGTCACAGGGGGCCCAAACCATCTGGGCTGTAGG
GACTGTCTGGAGGCATCCTCACCGCAAACTTCATGTTCATCTTTCTCTAACTCCGCCCCC
GGCAGCAGGCAGCCTCTCCTCCCCCCCTCCTCCCCCACCATTAGTTCTAAGAAGCTAAGC
CTGACAGATGTGCTCTTTTCTCAGAAAAGGAAGTGGTTGTGCCGGGAGGAGATAACACCT
CCACTGGGGAATTGAGAAAGCTATCTGGCCAGCAGCACAAGCAAGCGAGCATGGGCTCTT
CACCTCCTCAGCTCAGAAGCGGGTTGCTGGTCTTGGAGGCAGAGAAAGATAAAGCGTTTA
CTAGGGGCACAGATACACATTTAGGGGCTCACAACCTCCTCCCCAGGGAGTGACGGCCAA
TATTTACCGAGCACTTGTCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCACTCTCTCGGCAGGGAGGTGCAGGCGGAGACTCAGAGGAAGTGAGGTTTGTGGTTG
GAATCCACTTCCCTTGGCTTTGCCAGGGGCGGGGCATTGGCCTTAGCAATGTCAGAGGAA
CAGCCTCTCTCCTCTACCCTGGGGAATGTGGGCCTGGATGCGGACAACTTGGAGAAGCAG
CTCAAGGGGGCAGGGCCAAAGAGATGGGTGGCCAGACTGTGCTGGGCTGACGCCTCAGTC
TAGCCTGGCCCACCCAGCTCTGGGCAGCACAGCAGGCTGCCCTACCTCTGAGCTCAGTTT
CTCCTGCTTTGACCTCACAAGGTGGAGACTGGGGGATGAAAGCACCTGGTAAAGCCAGGT
GGCCTTGGTGTTACTGGCTGAAGAGGTGTCACAGGGGGCCCAAACCATCTGGGCTGTAGG
GACTGTCTGGAGGCATCCTCACCGCAAACTTCATGTTCATCTTTCTCTAACTCCGCCCCC
GGCAGCAGGCAGCCTCTCCTCCCCCCCTCCTCCCCCACCATTAGTTCTAAGAAGCTAAGC
CTGACAGATGTGCTCTTTTCTCAGAAAAGGAAGTGGTTGTGCCGGGAGGAGATAACACCT
CCACTGGGGAATTGAGAAAGCTATCTGGCCAGCAGCACAAGCAAGCGAGCATGGGCTCTT
CACCTCCTCAGCTCAGAAGCGGGTTGCTGGTCTTGGAGGCAGAGAAAGATAAAGCGTTTA
CTAGGGGCACAGATACACATTTAGGGGCTCACAACCTCCTCCCCAGGGAGTGACGGCCAA
TATTTACCGAGCACTTGTCACAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               200-429, - strand, RNAz p=0.993299
               

               
               505-644, - strand, RNAz p=0.966465

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-429, - strand, RNAz p=0.993299
               

               
               505-644, - strand, RNAz p=0.966465

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               84-796, gnl|bosTau2|chr13 (43381529-43382261)
               

               
               84-796, gnl|Hg17|chr20 (29727022-29727693)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-796, gnl|bosTau2|chr13 (43381529-43382261)
               

               
               84-796, gnl|Hg17|chr20 (29727022-29727693)

	200-429, - strand, RNAz p=0.993299
	505-644, - strand, RNAz p=0.966465

	84-796, gnl\|bosTau2\|chr13 (43381529-43382261)
	84-796, gnl\|Hg17\|chr20 (29727022-29727693)