Non-Coding RNA Search

Thy1-THY010034D06

Sequence:


               
               AAAAAGCCCCTAAAATGGCGCCGGGGGAGACGGTGAAGGTTGCCGCCTGCCTGTCTGGGC
TCTAGTCCGCCGTCACCCCGTGCCCTCTTCCCCCGGCGGCAGGCCCATGGCCTGGCGGAG
GCCCGGACCATGGACCTCCATACCGCCGTGTACAATGCTGCCCGTGATGGCAAGCTGCAG
CTGCTTCAGAAGCTGCTCAGCGGCCGGAGCCGGGAGGGGCTGGAGGAGCTGACGGGCGAG
GTGGCCAGCGGGGGAACACCGCTGCTAATCGCCGCCCGCTACGGCCACTTGGACGTGGTC
GAGTACCTGGTGGACCGGTGCGGCGCGAGCGTGGAAGCAGGCGGCTCGGTGCACTTCGAT
GGCGAGACCATCGAGGGCGCGCCGCCGCTGTGGGCCGCCTCTGCTGCGGGCCACCTGGAC
GTGGTGCGGAGCCTGCTGCGCCGCGGGGCCTCGGTGAACCGCACCACACGCACCAACTCG
ACGCCCTTGCGCGCCGCCTGCTTCGACGGGCACCTGGAGGTGGTGCGCTACTTGGTGGGC
GAGCACCAGGCGGACCTGGAGGTGGCCAACCGGCACGGGCACACGTGCCTTATGATTTCC
TGTTACAAGGGCCACCGCGAGATCGCCCGCTACCTGCTGGAGCAAGGCGCCCAGGTGAAT
CGGCGCAGCGCCAAAGGCAACACGGCCCTGCACGACTGTGCTGAGTCTGGCAGCCTGGAG
ATCTTGCAGCTGCTGCTCGGGTGCAACGCCCGCATGGAACGTGACGGCTACGGTATGACT
CCGCTGCTGGCGGCCAGCGTGACGGGCCACACCAACATCGTGGAGTACCTTATCCAGGAG
CAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCCCCTAAAATGGCGCCGGGGGAGACGGTGAAGGTTGCCGCCTGCCTGTCTGGGC
TCTAGTCCGCCGTCACCCCGTGCCCTCTTCCCCCGGCGGCAGGCCCATGGCCTGGCGGAG
GCCCGGACCATGGACCTCCATACCGCCGTGTACAATGCTGCCCGTGATGGCAAGCTGCAG
CTGCTTCAGAAGCTGCTCAGCGGCCGGAGCCGGGAGGGGCTGGAGGAGCTGACGGGCGAG
GTGGCCAGCGGGGGAACACCGCTGCTAATCGCCGCCCGCTACGGCCACTTGGACGTGGTC
GAGTACCTGGTGGACCGGTGCGGCGCGAGCGTGGAAGCAGGCGGCTCGGTGCACTTCGAT
GGCGAGACCATCGAGGGCGCGCCGCCGCTGTGGGCCGCCTCTGCTGCGGGCCACCTGGAC
GTGGTGCGGAGCCTGCTGCGCCGCGGGGCCTCGGTGAACCGCACCACACGCACCAACTCG
ACGCCCTTGCGCGCCGCCTGCTTCGACGGGCACCTGGAGGTGGTGCGCTACTTGGTGGGC
GAGCACCAGGCGGACCTGGAGGTGGCCAACCGGCACGGGCACACGTGCCTTATGATTTCC
TGTTACAAGGGCCACCGCGAGATCGCCCGCTACCTGCTGGAGCAAGGCGCCCAGGTGAAT
CGGCGCAGCGCCAAAGGCAACACGGCCCTGCACGACTGTGCTGAGTCTGGCAGCCTGGAG
ATCTTGCAGCTGCTGCTCGGGTGCAACGCCCGCATGGAACGTGACGGCTACGGTATGACT
CCGCTGCTGGCGGCCAGCGTGACGGGCCACACCAACATCGTGGAGTACCTTATCCAGGAG
CAGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|9187618|emb|CAB96957.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9187618|emb|CAB96957.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               83-201, - strand, RNAz p=0.824926
               

               
               282-441, - strand, RNAz p=0.848551
               

               
               562-761, - strand, RNAz p=0.678131

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-201, - strand, RNAz p=0.824926
               

               
               282-441, - strand, RNAz p=0.848551
               

               
               562-761, - strand, RNAz p=0.678131

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-846, gnl|bosTau2|chr7 (15389803-15390645)
               

               
               4-846, gnl|Hg17|chr19 (4742749-4743583)
               

               
               4-846, gnl|Mm7|chr17 (54415071-54415874)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-846, gnl|bosTau2|chr7 (15389803-15390645)
               

               
               4-846, gnl|Hg17|chr19 (4742749-4743583)
               

               
               4-846, gnl|Mm7|chr17 (54415071-54415874)

	83-201, - strand, RNAz p=0.824926
	282-441, - strand, RNAz p=0.848551
	562-761, - strand, RNAz p=0.678131

	4-846, gnl\|bosTau2\|chr7 (15389803-15390645)
	4-846, gnl\|Hg17\|chr19 (4742749-4743583)
	4-846, gnl\|Mm7\|chr17 (54415071-54415874)