Non-Coding RNA Search

Thy1-THY010038G08

Sequence:


               
               TGGCACTGACTCAGAGAGCAGGGGTGGGGGAAGGAGAAAGAACTCGCGGGGGCTCCGGCG
CCGGGGCAGAAGGAGCAGGAGGAGAGCGGGCAGGCGAGAGCGCACGGCGGTGGAGAGCCC
CTCGATCAATTTTCATGCAAGAATCATTATCGGTAAATTGGAAAGCTGGCTGCCTGACAG
CAGATTTGTCTCCCCTAATGAAAGCGAAAGGGTAGGGGCGCAGCGGCGGGCGGCTGCAGG
CGGCGGCGGCTCCTTCCGTCTCTACGCCGCATCTTCCAAGAGCTCCAGGCTTCGCAGGGC
GATAATAATAGTTTCACTTGCGAGCTTCCCCCCGCGCGGCCGCGGAGCCGGGCGCCAGAT
CCGTGCGGACTGGGATCGGGGCGCAGAGACCTGGGCTCCCCTCTCCCAATGCAGGGAGGG
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTCGGCAGGGTGCTCCCCTCTGCCCCGAA
GCGGGGGCCGTTTGCAAACTGTGGGCGGCTGCGGGCGCCGCCGGTCCCCCCTCCGGCTGC
CCAACTCCGCGCTCTGGCCGCCCGCCCGTCCTCCCTCCCTCCCCACCCACGTCTGACAGC
TGCGGGAGCGGAGAGTTCACTCGCCGCGGGGGCCTGGGAGGAGGATCCCCCAATCGTGCT
CCGGGAGCTCTGGCCCGCCTTTTGTGAGACCCACTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCACTGACTCAGAGAGCAGGGGTGGGGGAAGGAGAAAGAACTCGCGGGGGCTCCGGCG
CCGGGGCAGAAGGAGCAGGAGGAGAGCGGGCAGGCGAGAGCGCACGGCGGTGGAGAGCCC
CTCGATCAATTTTCATGCAAGAATCATTATCGGTAAATTGGAAAGCTGGCTGCCTGACAG
CAGATTTGTCTCCCCTAATGAAAGCGAAAGGGTAGGGGCGCAGCGGCGGGCGGCTGCAGG
CGGCGGCGGCTCCTTCCGTCTCTACGCCGCATCTTCCAAGAGCTCCAGGCTTCGCAGGGC
GATAATAATAGTTTCACTTGCGAGCTTCCCCCCGCGCGGCCGCGGAGCCGGGCGCCAGAT
CCGTGCGGACTGGGATCGGGGCGCAGAGACCTGGGCTCCCCTCTCCCAATGCAGGGAGGG
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTCGGCAGGGTGCTCCCCTCTGCCCCGAA
GCGGGGGCCGTTTGCAAACTGTGGGCGGCTGCGGGCGCCGCCGGTCCCCCCTCCGGCTGC
CCAACTCCGCGCTCTGGCCGCCCGCCCGTCCTCCCTCCCTCCCCACCCACGTCTGACAGC
TGCGGGAGCGGAGAGTTCACTCGCCGCGGGGGCCTGGGAGGAGGATCCCCCAATCGTGCT
CCGGGAGCTCTGGCCCGCCTTTTGTGAGACCCACTTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               346-545, - strand, RNAz p=0.9824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-545, - strand, RNAz p=0.9824

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-694, gnl|bosTau2|chr18 (7833349-7832688)
               

               
               4-694, gnl|canFam2|chr5 (70107912-70107409)
               

               
               4-694, gnl|echTel1|scaffold_129935 (798-285)
               

               
               4-694, gnl|hg17|chr16 (84145739-84146254)
               

               
               4-694, gnl|Hg17|chr16 (84146468-84145777)
               

               
               4-694, gnl|mm7|chr8 (119122464-119122879)
               

               
               4-694, gnl|Mm7|chr8 (119123090-119122491)
               

               
               4-694, gnl|rheMac2|chr20 (83717382-83717897)
               

               
               4-694, gnl|rn3|chr19 (50829697-50830113)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-694, gnl|bosTau2|chr18 (7833349-7832688)
               

               
               4-694, gnl|canFam2|chr5 (70107912-70107409)
               

               
               4-694, gnl|echTel1|scaffold_129935 (798-285)
               

               
               4-694, gnl|hg17|chr16 (84145739-84146254)
               

               
               4-694, gnl|Hg17|chr16 (84146468-84145777)
               

               
               4-694, gnl|mm7|chr8 (119122464-119122879)
               

               
               4-694, gnl|Mm7|chr8 (119123090-119122491)
               

               
               4-694, gnl|rheMac2|chr20 (83717382-83717897)
               

               
               4-694, gnl|rn3|chr19 (50829697-50830113)

	4-694, gnl\|bosTau2\|chr18 (7833349-7832688)
	4-694, gnl\|canFam2\|chr5 (70107912-70107409)
	4-694, gnl\|echTel1\|scaffold_129935 (798-285)
	4-694, gnl\|hg17\|chr16 (84145739-84146254)
	4-694, gnl\|Hg17\|chr16 (84146468-84145777)
	4-694, gnl\|mm7\|chr8 (119122464-119122879)
	4-694, gnl\|Mm7\|chr8 (119123090-119122491)
	4-694, gnl\|rheMac2\|chr20 (83717382-83717897)
	4-694, gnl\|rn3\|chr19 (50829697-50830113)