Non-Coding RNA Search

Thy1-THY010039A12

Sequence:


               
               ATCGCCTCCGTGGTAGAAAATAAGAAAACCTCAGATGCAGCAAAACGGGCCTGTAACTTG
ACTGATACCCAAAAGGAAGTGAAGGAGATGGTGATGGGGTTAAATGTGCTGGACCCCCAC
ACCTCTCACTCCTGGCTCTGTGATGGAAGACTTCTGTGTCTCCATGACCCCAGCAACAAA
AACAATTGGAAGATCTTCCGGGAGTGCTGGAAGCAAGGCCAGCCAGTGCTGGTTTCAGGG
GTACATAAAAAGCTCAAGTCTGAACTCTGGAAGCCAGAAGCCTTTAGCCAGGAATTTGGA
GACCAGGATGTGGACTTGGTGAACTGCAGGAACTGTGCTATCATTTCCGACGTCAAAGTT
CGGGATTTCTGGGATGGCTTTGAGATCATATGCAAGCGATTAAGGTCAGAAGATGGGCAG
CCAATGGTGCTCAAACTCAAGGACTGGCCTCCTGGGGAAGATTTTCGGGACATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGCCTCCGTGGTAGAAAATAAGAAAACCTCAGATGCAGCAAAACGGGCCTGTAACTTG
ACTGATACCCAAAAGGAAGTGAAGGAGATGGTGATGGGGTTAAATGTGCTGGACCCCCAC
ACCTCTCACTCCTGGCTCTGTGATGGAAGACTTCTGTGTCTCCATGACCCCAGCAACAAA
AACAATTGGAAGATCTTCCGGGAGTGCTGGAAGCAAGGCCAGCCAGTGCTGGTTTCAGGG
GTACATAAAAAGCTCAAGTCTGAACTCTGGAAGCCAGAAGCCTTTAGCCAGGAATTTGGA
GACCAGGATGTGGACTTGGTGAACTGCAGGAACTGTGCTATCATTTCCGACGTCAAAGTT
CGGGATTTCTGGGATGGCTTTGAGATCATATGCAAGCGATTAAGGTCAGAAGATGGGCAG
CCAATGGTGCTCAAACTCAAGGACTGGCCTCCTGGGGAAGATTTTCGGGACATGATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-199, - strand, RNAz p=0.598542
               

               
               124-222, - strand, RNAz p=0.92056

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.598542
               

               
               124-222, - strand, RNAz p=0.92056

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-222, gnl|bosTau2|chr7 (34904405-34904626)
               

               
               1-222, gnl|canFam2|chr11 (29030743-29031004)
               

               
               1-222, gnl|danRer3|chr6 (31068290-31068010)
               

               
               1-222, gnl|dasNov1|scaffold_9396 (25665-25404)
               

               
               1-222, gnl|echTel1|scaffold_188499 (12705-12954)
               

               
               1-222, gnl|fr1|chrUn (114143757-114143503)
               

               
               1-222, gnl|galGal2|chr13 (17199343-17199604)
               

               
               1-222, gnl|hg17|chr5 (137787687-137787948)
               

               
               1-222, gnl|Hg17|chr5 (137787708-137787929)
               

               
               1-222, gnl|loxAfr1|scaffold_30995 (5590-5373)
               

               
               1-222, gnl|mm7|chr18 (35203464-35203735)
               

               
               1-222, gnl|Mm7|chr18 (35203485-35203706)
               

               
               1-222, gnl|monDom2|scaffold_6 (71009914-71009653)
               

               
               1-222, gnl|oryCun1|scaffold_213143 (191437-191695)
               

               
               1-222, gnl|panTro1|chr4 (144394557-144394818)
               

               
               1-222, gnl|rheMac2|chr6 (134838485-134838746)
               

               
               1-222, gnl|rn3|chr4 (105118949-105118732)
               

               
               1-222, gnl|tetNig1|chr1 (965280-965534)
               

               
               1-222, gnl|xenTro1|scaffold_230 (1150878-1150627)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr7 (34904405-34904626)
               

               
               1-222, gnl|canFam2|chr11 (29030743-29031004)
               

               
               1-222, gnl|danRer3|chr6 (31068290-31068010)
               

               
               1-222, gnl|dasNov1|scaffold_9396 (25665-25404)
               

               
               1-222, gnl|echTel1|scaffold_188499 (12705-12954)
               

               
               1-222, gnl|fr1|chrUn (114143757-114143503)
               

               
               1-222, gnl|galGal2|chr13 (17199343-17199604)
               

               
               1-222, gnl|hg17|chr5 (137787687-137787948)
               

               
               1-222, gnl|Hg17|chr5 (137787708-137787929)
               

               
               1-222, gnl|loxAfr1|scaffold_30995 (5590-5373)
               

               
               1-222, gnl|mm7|chr18 (35203464-35203735)
               

               
               1-222, gnl|Mm7|chr18 (35203485-35203706)
               

               
               1-222, gnl|monDom2|scaffold_6 (71009914-71009653)
               

               
               1-222, gnl|oryCun1|scaffold_213143 (191437-191695)
               

               
               1-222, gnl|panTro1|chr4 (144394557-144394818)
               

               
               1-222, gnl|rheMac2|chr6 (134838485-134838746)
               

               
               1-222, gnl|rn3|chr4 (105118949-105118732)
               

               
               1-222, gnl|tetNig1|chr1 (965280-965534)
               

               
               1-222, gnl|xenTro1|scaffold_230 (1150878-1150627)

	80-199, - strand, RNAz p=0.598542
	124-222, - strand, RNAz p=0.92056

	1-222, gnl\|bosTau2\|chr7 (34904405-34904626)
	1-222, gnl\|canFam2\|chr11 (29030743-29031004)
	1-222, gnl\|danRer3\|chr6 (31068290-31068010)
	1-222, gnl\|dasNov1\|scaffold_9396 (25665-25404)
	1-222, gnl\|echTel1\|scaffold_188499 (12705-12954)
	1-222, gnl\|fr1\|chrUn (114143757-114143503)
	1-222, gnl\|galGal2\|chr13 (17199343-17199604)
	1-222, gnl\|hg17\|chr5 (137787687-137787948)
	1-222, gnl\|Hg17\|chr5 (137787708-137787929)
	1-222, gnl\|loxAfr1\|scaffold_30995 (5590-5373)
	1-222, gnl\|mm7\|chr18 (35203464-35203735)
	1-222, gnl\|Mm7\|chr18 (35203485-35203706)
	1-222, gnl\|monDom2\|scaffold_6 (71009914-71009653)
	1-222, gnl\|oryCun1\|scaffold_213143 (191437-191695)
	1-222, gnl\|panTro1\|chr4 (144394557-144394818)
	1-222, gnl\|rheMac2\|chr6 (134838485-134838746)
	1-222, gnl\|rn3\|chr4 (105118949-105118732)
	1-222, gnl\|tetNig1\|chr1 (965280-965534)
	1-222, gnl\|xenTro1\|scaffold_230 (1150878-1150627)